Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.8e-119 432.6 215 100.0
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 2.0e-49 199.9 241 50.6
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.3e-48 197.2 241 49.8
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 7.0e-47 191.4 235 50.6
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 1.9e-44 183.3 235 49.8
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.2e-43 180.6 248 48.4
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 3.6e-43 179.1 233 47.6
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 3.6e-43 179.1 234 48.7
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.1e-42 177.6 233 47.2
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 1.4e-42 177.2 234 48.3
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.8e-42 176.8 240 47.1
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 2.9e-40 169.5 240 45.4
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.6e-38 163.7 240 44.6
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 3.0e-37 159.5 233 42.9
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 3.0e-37 159.5 241 42.7
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 3.9e-37 159.1 241 41.9
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 5.1e-37 158.7 240 43.8
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 5.6e-36 155.2 232 42.7
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 7.3e-36 154.8 233 41.2
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 9.5e-36 154.5 209 48.3
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 9.5e-36 154.5 240 42.5
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.2e-35 154.1 233 42.5
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 1.2e-35 154.1 240 41.7
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 1.2e-35 154.1 240 42.1
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.6e-35 153.7 238 41.6
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.6e-35 153.7 252 41.3
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.1e-35 153.3 233 40.8
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 8.1e-35 151.4 240 41.7
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 8.1e-35 151.4 234 42.3
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 1.1e-34 151.0 241 40.7
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.4e-34 150.6 240 40.8
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.3e-34 149.8 235 40.4
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 2.3e-34 149.8 232 41.4
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 5.2e-34 148.7 233 39.9
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 5.2e-34 148.7 232 40.5
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 6.8e-34 148.3 240 41.2
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 6.8e-34 148.3 240 41.2
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 6.8e-34 148.3 233 40.8
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 8.9e-34 147.9 233 39.5
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 1.2e-33 147.5 243 41.6
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 3.4e-33 146.0 232 39.7
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 5.8e-33 145.2 241 40.2
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 7.6e-33 144.8 241 39.0
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 9.9e-33 144.4 240 39.6
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.3e-32 144.1 233 40.3
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.2e-32 143.3 236 40.3
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.2e-32 143.3 232 39.7
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 3.8e-32 142.5 233 39.5
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 4.9e-32 142.1 241 38.2
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 4.9e-32 142.1 240 39.6
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 6.4e-32 141.7 232 40.5
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 8.4e-32 141.4 232 40.5
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 8.4e-32 141.4 235 38.3
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.9e-31 140.2 232 40.5
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 4.1e-31 139.0 246 38.2
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 7.1e-31 138.3 232 40.1
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 7.1e-31 138.3 232 40.1
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 7.1e-31 138.3 232 40.1
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 7.1e-31 138.3 232 39.7
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 7.1e-31 138.3 271 36.2
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.2e-30 137.5 232 39.7
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.2e-30 137.5 232 40.1
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.2e-30 137.5 232 40.1
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.2e-30 137.5 232 40.1
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 2.7e-30 136.3 227 38.3
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 4.6e-30 135.6 232 39.2
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 4.6e-30 135.6 240 37.9
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 7.8e-30 134.8 232 39.7
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.3e-29 134.0 241 39.0
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.7e-29 133.7 234 38.5
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 2.3e-29 133.3 96 65.6
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 3.0e-29 132.9 232 38.8
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 3.0e-29 132.9 95 67.4
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 3.0e-29 132.9 95 67.4
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 3.9e-29 132.5 234 38.5
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 5.1e-29 132.1 238 38.2
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 6.6e-29 131.7 95 67.4
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 8.6e-29 131.3 95 66.3
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 1.5e-28 130.6 246 35.8
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.5e-28 129.8 95 64.2
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 9.6e-28 127.9 240 37.5
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 2.1e-27 126.7 240 37.1
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 8.1e-27 124.8 95 64.2
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 5.8e-25 118.6 218 37.6
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 9.9e-25 117.9 240 34.2
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.3e-24 117.5 233 34.3
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.7e-24 117.1 218 37.2
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.7e-24 117.1 240 33.8
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 2.2e-24 116.7 240 33.3
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.9e-24 116.3 233 33.9
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 4.9e-24 115.5 233 34.3
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 4.2e-23 112.5 95 57.9
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 5.4e-23 112.1 243 31.7
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 5.4e-23 112.1 240 32.5
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 2.7e-22 109.8 95 57.9
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 4.6e-22 109.0 233 31.8
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.0e-21 107.8 241 31.5
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.3e-21 107.5 232 31.5
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 2.3e-21 106.7 241 33.6
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 3.0e-21 106.3 96 57.3
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.1e-20 104.4 232 34.5
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.5e-20 104.0 218 33.5
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 7.3e-20 101.7 82 59.8
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 4.8e-19 99.0 220 35.0
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 6.2e-19 98.6 95 48.4
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 1.8e-18 97.1 274 29.2
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 4.0e-18 95.9 191 34.6
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.9e-16 89.7 72 61.1
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 3.2e-15 86.3 130 40.0
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.6e-14 82.4 219 31.5
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 3.3e-12 76.3 150 35.3
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 1.3e-11 74.3 72 51.4
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 1.4e-10 70.9 95 34.7
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.2e-09 67.8 64 53.1
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 1.1e-07 61.2 43 69.8
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 4.2e-07 59.3 60 48.3
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 9.3e-07 58.2 107 38.3


User provided reference genes

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