Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g069920 Pisum sativum HOM05D000027 ORTHO05D330652 1.2e-32 142.5 70 100.0
Ca_00278_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.4e-12 75.9 46 82.6
Ca_27989_v3 Cicer arietinum L. HOM05D000027 ORTHO05D000066 4.1e-12 74.3 46 80.4
Ca_31035_v3 Cicer arietinum L. HOM05D000027 ORTHO05D000066 1.2e-11 72.8 45 80.0
Ca_19140_v3 Cicer arietinum L. HOM05D000027 ORTHO05D000066 7.7e-11 70.1 45 77.8
VMungo0647G0889 Vigna mungo HOM05D000027 ORTHO05D000066 1.0e-10 69.7 46 73.9
Ca_12419_v3 Cicer arietinum L. HOM05D000027 ORTHO05D000066 1.7e-10 68.9 45 77.8
Glyma.13G090300 Glycine max HOM05D000027 ORTHO05D000066 2.9e-10 68.2 45 75.6
Glyma.14G175000 Glycine max HOM05D000027 ORTHO05D000066 2.9e-10 68.2 46 73.9
Phvul.008G174700 Phaseolus vulgaris HOM05D000027 ORTHO05D000066 3.8e-10 67.8 44 72.7
arahy.Tifrunner.gnm1.ann1.54ALND Arachis hypogaea HOM05D000027 ORTHO05D000066 6.5e-10 67.0 46 73.9
arahy.Tifrunner.gnm1.ann1.6H4NJX Arachis hypogaea HOM05D000027 ORTHO05D000066 6.5e-10 67.0 46 73.9
Glyma.15G234700 Glycine max HOM05D000027 ORTHO05D000066 6.5e-10 67.0 46 69.6
Medtr5g064240 Medicago truncatula HOM05D000027 ORTHO05D000066 6.5e-10 67.0 46 73.9
Medtr5g464810 Medicago truncatula HOM05D000027 ORTHO05D000066 6.5e-10 67.0 46 73.9
Phvul.008G175300 Phaseolus vulgaris HOM05D000027 ORTHO05D000066 6.5e-10 67.0 46 71.7
Phvul.008G175500 Phaseolus vulgaris HOM05D000027 ORTHO05D000066 8.5e-10 66.6 46 71.7
VMungo0647G0919 Vigna mungo HOM05D000027 ORTHO05D000066 1.1e-09 66.2 46 65.2
Medtr5g464760 Medicago truncatula HOM05D000027 ORTHO05D000066 1.9e-09 65.5 45 73.3
Glyma.14G175400 Glycine max HOM05D000027 ORTHO05D000066 2.5e-09 65.1 45 71.1
LjContig00551g0013171 Lotus japonicus HOM05D000027 ORTHO05D000066 2.5e-09 65.1 45 71.1
arahy.Tifrunner.gnm1.ann1.92DGJ8 Arachis hypogaea HOM05D000027 ORTHO05D000066 4.2e-09 64.3 46 63.0
arahy.Tifrunner.gnm1.ann1.MWT26D Arachis hypogaea HOM05D000027 ORTHO05D000066 4.2e-09 64.3 46 63.0
Medtr0036s0220 Medicago truncatula HOM05D000027 ORTHO05D000066 4.2e-09 64.3 45 71.1
Glyma.14G175800 Glycine max HOM05D000027 ORTHO05D000066 1.6e-08 62.4 46 69.6
arahy.Tifrunner.gnm1.ann1.0AZ5VJ Arachis hypogaea HOM05D000027 ORTHO05D000066 2.7e-08 61.6 46 67.4
Lalb_Chr04g0253111 Lupinus albus HOM05D000027 ORTHO05D000066 2.7e-08 61.6 46 60.9
arahy.Tifrunner.gnm1.ann1.K8NQ3M Arachis hypogaea HOM05D000027 ORTHO05D000066 6.1e-08 60.5 46 65.2
FAN18G4001 Fragaria x ananassa HOM05D000027 ORTHO05D000066 6.1e-08 60.5 47 63.8
FAN04G0025 Fragaria x ananassa HOM05D000027 ORTHO05D000066 1.0e-07 59.7 47 63.8
arahy.Tifrunner.gnm1.ann1.A0XZP2 Arachis hypogaea HOM05D000027 ORTHO05D000066 1.8e-07 58.9 46 65.2
arahy.Tifrunner.gnm1.ann1.XMFH5N Arachis hypogaea HOM05D000027 ORTHO05D000066 1.8e-07 58.9 46 63.0
FvH4_5g36970 Fragaria vesca HOM05D000027 ORTHO05D000066 1.8e-07 58.9 47 61.7
MD09G1135900 Malus domestica HOM05D000027 ORTHO05D000066 1.8e-07 58.9 49 61.2
Prupe.1G520100 Prunus persica HOM05D000027 ORTHO05D000066 1.8e-07 58.9 47 61.7
Hma1.2p1_0575F.1_g181715 Hydrangea macrophylla HOM05D000027 ORTHO05D000066 3.0e-07 58.2 47 59.6
Hma1.2p1_0575F.1_g181720 Hydrangea macrophylla HOM05D000027 ORTHO05D000066 3.0e-07 58.2 47 59.6
MD17G1125800 Malus domestica HOM05D000027 ORTHO05D000066 3.0e-07 58.2 49 57.1
Haze_12951 Corylus avellana HOM05D000027 ORTHO05D000066 4.0e-07 57.8 49 61.2
Solyc04g074380.4 Solanum lycopersicum HOM05D000027 ORTHO05D000066 4.0e-07 57.8 47 61.7
Sopen00g004090 Solanum pennellii HOM05D000027 ORTHO05D000066 4.0e-07 57.8 47 61.7
Sopen00g005840 Solanum pennellii HOM05D000027 ORTHO05D000066 4.0e-07 57.8 47 61.7
TWI36G1581 Tripterygium wilfordii HOM05D000027 ORTHO05D000066 4.0e-07 57.8 47 61.7
Lalb_Chr17g0344221 Lupinus albus HOM05D000027 ORTHO05D000066 5.2e-07 57.4 45 64.4
RcHm_v2.0_Chr7g0243731 Rosa chinensis HOM05D000027 ORTHO05D000066 5.2e-07 57.4 47 63.8
MD08G1185500 Malus domestica HOM05D000027 ORTHO05D000066 6.7e-07 57.0 47 59.6
FvH4_6g39813 Fragaria vesca HOM05D000027 ORTHO05D000066 8.8e-07 56.6 49 57.1
FAN08G0562 Fragaria x ananassa HOM05D000027 ORTHO05D000066 8.8e-07 56.6 47 59.6
FAN13G0227 Fragaria x ananassa HOM05D000027 ORTHO05D000066 8.8e-07 56.6 47 59.6
FAN13G2078 Fragaria x ananassa HOM05D000027 ORTHO05D000066 8.8e-07 56.6 47 59.6
Potri.006G023151 Populus trichocarpa HOM05D000027 ORTHO05D000066 8.8e-07 56.6 46 60.9
Prupe.1G053500 Prunus persica HOM05D000027 ORTHO05D000066 8.8e-07 56.6 49 59.2
TWI36G0191 Tripterygium wilfordii HOM05D000027 ORTHO05D000066 8.8e-07 56.6 47 61.7
TWI36G1019 Tripterygium wilfordii HOM05D000027 ORTHO05D000066 8.8e-07 56.6 47 61.7
Duzib041G0465 Durio zibethinus HOM05D000027 ORTHO05D000066 1.2e-06 56.2 47 59.6
Duzib041G0551 Durio zibethinus HOM05D000027 ORTHO05D000066 1.2e-06 56.2 47 59.6
Potri.017G052166 Populus trichocarpa HOM05D000027 ORTHO05D000066 1.2e-06 56.2 46 63.0
Potri.017G052300 Populus trichocarpa HOM05D000027 ORTHO05D000066 1.2e-06 56.2 46 63.0
Prupe.1G053300 Prunus persica HOM05D000027 ORTHO05D000066 1.2e-06 56.2 49 57.1
Sopen00g008610 Solanum pennellii HOM05D000027 ORTHO05D000066 1.2e-06 56.2 48 58.3
AUR62018941 Chenopodium quinoa HOM05D000027 ORTHO05D000066 1.5e-06 55.8 47 59.6
AUR62027783 Chenopodium quinoa HOM05D000027 ORTHO05D000066 1.5e-06 55.8 47 59.6
Ca_30819_v3 Cicer arietinum L. HOM05D000027 ORTHO05D000066 1.5e-06 55.8 37 75.7
Haze_20780 Corylus avellana HOM05D000027 ORTHO05D000066 1.5e-06 55.8 49 57.1
FvH4_6g39872 Fragaria vesca HOM05D000027 ORTHO05D000066 1.5e-06 55.8 49 57.1
FAN14G1706 Fragaria x ananassa HOM05D000027 ORTHO05D000066 1.5e-06 55.8 49 57.1
Nitab4.5_0013516g0020 Nicotiana tabacum HOM05D000027 ORTHO05D000066 1.5e-06 55.8 46 60.9
Prupe.3G189600 Prunus persica HOM05D000027 ORTHO05D000066 1.5e-06 55.8 49 59.2
Solyc04g074350.3 Solanum lycopersicum HOM05D000027 ORTHO05D000066 1.5e-06 55.8 48 58.3
Thecc.08G104800 Theobroma cacao HOM05D000027 ORTHO05D000066 1.5e-06 55.8 45 62.2
arahy.Tifrunner.gnm1.ann1.ERP5CZ Arachis hypogaea HOM05D000027 ORTHO05D000066 2.0e-06 55.5 48 54.2
Haze_12740 Corylus avellana HOM05D000027 ORTHO05D000066 2.0e-06 55.5 49 59.2
Eucgr.E01564 Eucalyptus grandis HOM05D000027 ORTHO05D000066 2.0e-06 55.5 46 60.9
Eucgr.I02643 Eucalyptus grandis HOM05D000027 ORTHO05D000066 2.0e-06 55.5 45 60.0
Eucgr.L00508 Eucalyptus grandis HOM05D000027 ORTHO05D000066 2.0e-06 55.5 45 60.0
Eucgr.L00512 Eucalyptus grandis HOM05D000027 ORTHO05D000066 2.0e-06 55.5 45 60.0
Eucgr.L02357 Eucalyptus grandis HOM05D000027 ORTHO05D000066 2.0e-06 55.5 45 60.0
Phvul.008G175600 Phaseolus vulgaris HOM05D000027 ORTHO05D000066 2.0e-06 55.5 46 58.7
Prupe.3G188400 Prunus persica HOM05D000027 ORTHO05D000066 2.0e-06 55.5 49 57.1
Prupe.3G189700 Prunus persica HOM05D000027 ORTHO05D000066 2.0e-06 55.5 49 57.1
PGR042G1479 Punica granatum HOM05D000027 ORTHO05D000066 2.0e-06 55.5 47 59.6
PGR044G1119 Punica granatum HOM05D000027 ORTHO05D000066 2.0e-06 55.5 48 56.2
Solyc04g074390.3 Solanum lycopersicum HOM05D000027 ORTHO05D000066 2.0e-06 55.5 47 59.6
Haze_12819 Corylus avellana HOM05D000027 ORTHO05D000066 2.6e-06 55.1 49 57.1
FAN14G3174 Fragaria x ananassa HOM05D000027 ORTHO05D000066 2.6e-06 55.1 49 55.1
MBI05_g23516_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000066 2.6e-06 55.1 45 62.2
MBI05_g29013_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000066 2.6e-06 55.1 45 62.2
MD08G1185600 Malus domestica HOM05D000027 ORTHO05D000066 2.6e-06 55.1 47 57.4
MD16G1231000 Malus domestica HOM05D000027 ORTHO05D000066 2.6e-06 55.1 49 57.1
PSO781G0124 Papaver somniferum HOM05D000027 ORTHO05D000066 2.6e-06 55.1 47 55.3
Sabra17G0043500 Salix brachista HOM05D000027 ORTHO05D000066 2.6e-06 55.1 46 60.9
vmacro13715 Vaccinium macrocarpon HOM05D000148 ORTHO05D000081 2.6e-06 55.1 47 55.3
CiPaw.10G144800 Carya illinoinensis HOM05D000027 ORTHO05D000066 3.3e-06 54.7 47 57.4
Haze_12738 Corylus avellana HOM05D000027 ORTHO05D000066 3.3e-06 54.7 49 57.1
Haze_12953 Corylus avellana HOM05D000027 ORTHO05D000066 3.3e-06 54.7 49 57.1
Duzib132G0950 Durio zibethinus HOM05D000027 ORTHO05D000066 3.3e-06 54.7 49 53.1
Eucgr.H04754 Eucalyptus grandis HOM05D000027 ORTHO05D000066 3.3e-06 54.7 48 58.3
MD17G1125400 Malus domestica HOM05D000027 ORTHO05D000066 3.3e-06 54.7 49 55.1
Nitab4.5_0006097g0010 Nicotiana tabacum HOM05D000027 ORTHO05D000066 3.3e-06 54.7 45 60.0
Potri.006G023600 Populus trichocarpa HOM05D000027 ORTHO05D000066 3.3e-06 54.7 49 53.1
PGSC0003DMG400030824 Solanum tuberosum HOM05D000027 ORTHO05D000066 3.3e-06 54.7 47 57.4
arahy.Tifrunner.gnm1.ann1.AU90AL Arachis hypogaea HOM05D000027 ORTHO05D000066 4.4e-06 54.3 48 52.1
CSS0001530 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000066 4.4e-06 54.3 46 58.7
CSS0009723 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000066 4.4e-06 54.3 46 58.7
CSS0018640 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000066 4.4e-06 54.3 46 58.7
FAN02G3430 Fragaria x ananassa HOM05D000027 ORTHO05D000066 4.4e-06 54.3 46 58.7
Gohir.A02G142001 Gossypium hirsutum HOM05D000027 ORTHO05D000066 4.4e-06 54.3 56 50.0
Hma1.2p1_0522F.1_g171760 Hydrangea macrophylla HOM05D000027 ORTHO05D000066 4.4e-06 54.3 45 62.2
MD17G1126800 Malus domestica HOM05D000027 ORTHO05D000066 4.4e-06 54.3 49 55.1
Nitab4.5_0008995g0010 Nicotiana tabacum HOM05D000027 ORTHO05D000066 4.4e-06 54.3 47 57.4
PSO781G0117 Papaver somniferum HOM05D000027 ORTHO05D000066 4.4e-06 54.3 47 55.3
MSTRG.5271 Avicennia marina HOM05D000027 ORTHO05D000066 5.7e-06 53.9 48 56.2
CiPaw.10G144900 Carya illinoinensis HOM05D000027 ORTHO05D000066 5.7e-06 53.9 47 53.2
Gohir.A13G067800 Gossypium hirsutum HOM05D000027 ORTHO05D000066 5.7e-06 53.9 49 55.1
MBI02_g02168_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000066 5.7e-06 53.9 45 60.0
MD08G1185700 Malus domestica HOM05D000027 ORTHO05D000066 5.7e-06 53.9 46 60.9
MD13G1226000 Malus domestica HOM05D000027 ORTHO05D000066 5.7e-06 53.9 49 55.1
MD17G1124900 Malus domestica HOM05D000027 ORTHO05D000066 5.7e-06 53.9 47 57.4
Nitab4.5_0004373g0040 Nicotiana tabacum HOM05D000027 ORTHO05D000066 5.7e-06 53.9 46 58.7
Potri.006G022800 Populus trichocarpa HOM05D000027 ORTHO05D000066 5.7e-06 53.9 45 60.0
Prupe.1G519600 Prunus persica HOM05D000027 ORTHO05D000066 5.7e-06 53.9 47 57.4
RcHm_v2.0_Chr2g0154021 Rosa chinensis HOM05D000027 ORTHO05D000066 5.7e-06 53.9 49 55.1
RcHm_v2.0_Chr5g0038461 Rosa chinensis HOM05D000027 ORTHO05D000066 5.7e-06 53.9 49 55.1
RcHm_v2.0_Chr5g0038821 Rosa chinensis HOM05D000027 ORTHO05D000066 5.7e-06 53.9 49 55.1
RcHm_v2.0_Chr7g0231031 Rosa chinensis HOM05D000027 ORTHO05D000066 5.7e-06 53.9 47 59.6
RcHm_v2.0_Chr7g0231091 Rosa chinensis HOM05D000027 ORTHO05D000066 5.7e-06 53.9 47 59.6
Sabra16G0197200 Salix brachista HOM05D000027 ORTHO05D000066 5.7e-06 53.9 46 60.9
Solyc01g105350.3 Solanum lycopersicum HOM05D000027 ORTHO05D000066 5.7e-06 53.9 48 50.0
Eucgr.L00503 Eucalyptus grandis HOM05D000027 ORTHO05D000066 7.5e-06 53.5 46 60.9
FvH4_3g17550 Fragaria vesca HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 53.1
FAN16G0868 Fragaria x ananassa HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 53.1
MD09G1136200 Malus domestica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 50 54.0
MD13G1225900 Malus domestica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 53.1
Prupe.3G189100 Prunus persica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 53.1
Prupe.3G189500 Prunus persica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 51.0
Prupe.3G190300 Prunus persica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 53.1
Prupe.4G236600 Prunus persica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 51.0
Prupe.4G236700 Prunus persica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 51.0
Prupe.4G236800 Prunus persica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 51.0
Prupe.4G237000 Prunus persica HOM05D000027 ORTHO05D000066 7.5e-06 53.5 49 51.0
Sed0000622 Sechium edule HOM05D000027 ORTHO05D000066 7.5e-06 53.5 45 60.0
PGSC0003DMG400030823 Solanum tuberosum HOM05D000027 ORTHO05D000066 7.5e-06 53.5 46 58.7
TWI12G0654 Tripterygium wilfordii HOM05D000027 ORTHO05D000066 7.5e-06 53.5 45 57.8
TAR628G0628 Trochodendron aralioides HOM05D000027 ORTHO05D000066 7.5e-06 53.5 45 60.0
AT1G78270 Arabidopsis thaliana HOM05D000027 ORTHO05D000066 9.7e-06 53.1 47 53.2
CSS0023254 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000066 9.7e-06 53.1 45 51.1
Eucgr.I02655 Eucalyptus grandis HOM05D000027 ORTHO05D000066 9.7e-06 53.1 45 60.0
Gohir.D03G038700 Gossypium hirsutum HOM05D000027 ORTHO05D000066 9.7e-06 53.1 56 48.2
Hma1.2p1_0575F.1_g181743 Hydrangea macrophylla HOM05D000027 ORTHO05D000066 9.7e-06 53.1 46 56.5
Lj9A352T77 Lonicera japonica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 48 54.2
MBI02_g41950_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000066 9.7e-06 53.1 45 55.6
MD17G1125900 Malus domestica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 49 55.1
MD17G1126900 Malus domestica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 49 55.1
Nn1g05210 Nelumbo nucifera HOM05D000027 ORTHO05D000066 9.7e-06 53.1 46 54.3
Nn1g05406 Nelumbo nucifera HOM05D000027 ORTHO05D000066 9.7e-06 53.1 46 54.3
PSO384G0483 Papaver somniferum HOM05D000027 ORTHO05D000066 9.7e-06 53.1 47 53.2
Potri.006G022300 Populus trichocarpa HOM05D000027 ORTHO05D000066 9.7e-06 53.1 46 54.3
Potri.006G023101 Populus trichocarpa HOM05D000027 ORTHO05D000066 9.7e-06 53.1 46 54.3
Prupe.1G053400 Prunus persica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 49 55.1
Prupe.1G520000 Prunus persica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 47 57.4
Prupe.1G520300 Prunus persica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 47 55.3
Prupe.1G520400 Prunus persica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 47 55.3
Prupe.3G189300 Prunus persica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 49 53.1
Prupe.3G190600 Prunus persica HOM05D000027 ORTHO05D000066 9.7e-06 53.1 47 57.4
Sopen00g008620 Solanum pennellii HOM05D000027 ORTHO05D000066 9.7e-06 53.1 45 62.2
PGSC0003DMG400030806 Solanum tuberosum HOM05D000027 ORTHO05D000066 9.7e-06 53.1 47 59.6
PGSC0003DMG402030822 Solanum tuberosum HOM05D000027 ORTHO05D000066 9.7e-06 53.1 48 56.2


User provided reference genes

Program Settings