Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 4.3e-231 804.3 402 100.0
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 5.8e-204 714.1 403 89.3
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.1e-197 693.3 406 86.0
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.8e-197 692.6 403 86.6
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 9.0e-197 690.3 403 85.6
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.8e-189 666.0 406 82.3
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.1e-186 656.8 413 80.1
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.6e-185 652.9 405 82.2
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 3.0e-184 648.7 405 81.2
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 8.8e-184 647.1 403 82.4
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.4e-181 639.8 409 79.2
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-175 619.0 397 79.1
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.7e-174 616.3 404 78.5
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-174 615.1 397 79.1
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-173 611.7 341 88.3
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.3e-171 606.7 404 74.5
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.5e-170 603.2 403 75.2
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 4.2e-170 601.7 408 72.5
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 4.2e-170 601.7 408 72.5
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 8.0e-169 597.4 443 69.5
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.4e-168 596.7 403 74.4
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.8e-168 596.3 396 75.8
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 2.3e-168 595.9 396 75.8
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 8.8e-168 594.0 404 74.3
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 8.8e-168 594.0 401 74.8
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.0e-167 592.8 407 74.0
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.0e-167 592.8 396 75.5
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.4e-167 591.7 394 76.1
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 2.8e-166 589.0 394 75.1
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.8e-165 586.3 356 80.3
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.8e-165 586.3 401 72.8
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.0e-164 582.8 406 72.9
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.5e-164 582.0 404 73.0
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 4.5e-164 581.6 400 73.0
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.5e-164 581.6 394 73.9
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.5e-164 581.6 423 70.9
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 5.9e-164 581.3 403 72.0
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 5.9e-164 581.3 409 72.4
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.0e-163 580.5 405 71.6
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.3e-163 580.1 404 72.8
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.2e-163 579.3 405 71.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 2.9e-163 578.9 405 71.4
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 5.0e-163 578.2 401 73.1
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 6.5e-163 577.8 384 74.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 8.5e-163 577.4 400 72.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.1e-162 577.0 403 71.2
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.9e-162 576.2 402 71.4
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 7.2e-162 574.3 399 72.2
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 9.4e-162 573.9 403 70.7
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 9.4e-162 573.9 397 72.5
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 2.7e-161 572.4 412 70.9
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 3.6e-161 572.0 356 77.0
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 4.7e-161 571.6 404 71.3
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.7e-161 571.6 402 70.9
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 6.1e-161 571.2 402 69.2
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 8.0e-161 570.9 407 70.5
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.4e-160 570.1 391 72.6
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.4e-160 570.1 399 71.9
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.8e-160 569.7 368 76.6
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 2.3e-160 569.3 387 74.2
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 2.3e-160 569.3 429 66.7
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.0e-160 568.5 406 70.4
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 4.0e-160 568.5 347 78.1
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.0e-159 566.2 417 67.9
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 5.7e-159 564.7 403 69.7
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.3e-158 563.5 407 71.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 2.2e-158 562.8 407 71.3
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.8e-158 562.4 336 79.8
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.4e-157 559.3 346 78.3
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-157 558.9 397 74.1
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 3.1e-157 558.9 401 70.1
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 5.4e-157 558.1 369 72.4
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 5.4e-157 558.1 333 80.5
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 9.1e-157 557.4 425 66.8
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.2e-156 557.0 403 69.5
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.7e-156 555.8 418 67.7
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 2.7e-156 555.8 401 69.1
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 3.5e-156 555.4 406 70.9
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 4.5e-156 555.1 412 68.2
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 5.9e-156 554.7 351 74.6
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.3e-155 553.5 402 68.2
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.7e-155 553.1 396 71.5
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.5e-154 550.1 335 78.8
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.6e-153 546.6 403 67.7
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.7e-153 545.8 402 67.4
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 2.7e-153 545.8 381 69.8
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.7e-153 545.8 387 68.2
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 6.1e-153 544.7 401 67.1
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 8.0e-153 544.3 376 70.2
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.0e-152 542.3 401 66.8
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 5.2e-152 541.6 340 76.2
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 8.8e-152 540.8 332 77.1
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.2e-151 540.4 405 67.2
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-151 540.0 348 74.1
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.0e-151 539.7 407 67.6
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 5.7e-151 538.1 368 71.7
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 7.5e-151 537.7 402 66.9
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 9.8e-151 537.3 380 69.5
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.3e-150 537.0 320 78.8
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.8e-150 535.8 390 68.5
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.6e-148 530.0 379 68.9
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 7.7e-148 527.7 392 67.6
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-147 527.3 325 80.3
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-147 527.3 403 69.0
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-147 527.3 403 69.0
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.7e-147 526.6 298 85.2
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 4.3e-146 521.9 403 68.5
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 5.6e-146 521.5 359 71.6
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 7.3e-146 521.2 376 68.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.8e-144 516.5 383 66.6
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-141 506.9 279 87.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.6e-140 503.4 338 72.2
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 3.5e-140 502.3 283 84.8
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 1.7e-139 500.0 403 63.8
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 3.0e-139 499.2 405 62.7
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 8.6e-139 497.7 333 69.4
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.1e-138 497.3 297 77.8
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.5e-138 496.9 333 70.6
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 1.2e-137 493.8 362 67.1
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.2e-137 493.8 362 67.1
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 3.2e-133 479.2 328 68.0
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 9.2e-133 477.6 402 62.2
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.4e-128 463.8 337 65.6
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 2.3e-128 463.0 333 64.3
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.9e-126 456.1 326 69.6
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-124 450.7 354 64.4
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.2e-124 450.7 437 57.7
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 4.6e-116 422.2 376 57.4
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.7e-110 403.7 326 58.6
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 7.3e-106 388.3 319 59.2
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 6.2e-105 385.2 330 63.9
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 8.1e-105 384.8 263 71.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.3e-99 367.5 295 59.3
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.3e-97 360.9 331 58.9
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-94 349.0 358 57.0
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 6.7e-83 312.0 188 79.3
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 6.7e-83 312.0 225 69.8
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 9.6e-82 308.1 251 65.3
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.8e-73 280.0 157 84.1
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.6e-71 273.5 384 44.0
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-70 271.6 275 54.2
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 3.1e-64 250.0 143 77.6
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-61 241.5 235 58.3
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.3e-59 233.8 298 45.6
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-59 233.0 265 52.8
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-55 220.3 329 44.4
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 9.4e-53 211.8 116 87.9
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-51 208.0 132 80.3
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.4e-50 203.0 180 62.8
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 4.5e-47 193.0 180 61.7
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 4.5e-47 193.0 180 61.7
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-42 176.8 122 76.2
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-32 145.2 159 54.7
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-32 145.2 159 54.7
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 8.0e-28 129.0 234 36.3
Psat0s4321g0080 Pisum sativum HOM05D003122 ORTHO05D012218 2.7e-23 114.0 100 63.0
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 3.1e-19 100.5 171 35.7
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.8e-18 96.3 53 77.4
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.8e-18 96.3 53 77.4
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-14 84.0 51 80.4
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 4.9e-09 66.6 56 66.1
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 4.9e-09 66.6 56 66.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 6.4e-09 66.2 44 77.3
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 6.4e-09 66.2 39 84.6
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 5.4e-08 63.2 49 59.2


User provided reference genes

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