Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 9.1e-173 610.1 308 100.0
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 7.6e-119 431.0 319 73.7
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 5.4e-117 424.9 322 72.4
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 4.6e-116 421.8 321 72.0
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 8.7e-107 391.0 322 65.5
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 9.3e-101 370.9 331 64.4
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 1.3e-99 367.1 331 64.0
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 3.3e-98 362.5 329 63.2
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 6.9e-96 354.8 326 59.5
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 3.2e-93 345.9 351 60.4
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 1.0e-86 324.3 327 55.7
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 2.5e-85 319.7 334 55.1
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 9.3e-85 317.8 337 54.9
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 3.9e-83 312.4 323 55.1
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 8.7e-83 311.2 324 53.1
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 1.1e-82 310.8 322 54.0
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.1e-82 310.8 324 53.7
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 1.5e-82 310.5 325 54.8
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 2.2e-81 306.6 330 51.8
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 2.8e-81 306.2 328 53.0
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 3.7e-81 305.8 356 50.8
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 1.8e-80 303.5 327 52.3
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 5.3e-80 302.0 321 52.3
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 1.2e-79 300.8 334 53.6
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 4.5e-79 298.9 327 53.8
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 7.7e-79 298.1 325 53.2
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 7.7e-79 298.1 322 52.8
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 1.7e-78 297.0 337 50.1
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 8.5e-78 294.7 326 51.8
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.4e-77 293.9 313 53.4
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 5.5e-77 292.0 326 52.5
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 7.2e-77 291.6 349 49.0
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 6.1e-76 288.5 325 52.6
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 1.5e-74 283.9 333 53.8
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 2.0e-74 283.5 341 49.6
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 3.3e-74 282.7 340 50.0
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 7.4e-74 281.6 325 51.4
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.3e-73 280.8 321 48.3
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 3.7e-73 279.3 323 51.1
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 4.8e-73 278.9 361 46.8
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 6.3e-73 278.5 333 52.3
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 1.1e-72 277.7 324 49.7
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 3.1e-72 276.2 329 49.2
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 5.3e-72 275.4 325 50.8
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 5.3e-72 275.4 323 49.8
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 5.3e-72 275.4 356 47.2
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 2.6e-71 273.1 326 49.7
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 3.4e-71 272.7 330 50.0
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 7.7e-71 271.6 323 49.2
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 1.7e-70 270.4 348 47.1
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.9e-69 266.9 353 45.3
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 3.6e-68 262.7 328 48.8
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 4.7e-68 262.3 329 48.6
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 6.1e-68 261.9 324 46.9
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 7.9e-68 261.5 325 47.1
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.7e-65 253.8 335 47.5
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 4.8e-65 252.3 338 45.9
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 1.1e-64 251.1 308 49.7
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 1.4e-64 250.8 306 48.7
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 1.4e-64 250.8 336 49.4
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.4e-64 250.0 300 49.0
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 3.1e-64 249.6 345 42.9
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 4.1e-64 249.2 328 47.3
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 3.5e-63 246.1 169 75.7
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 4.5e-63 245.7 352 44.9
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 5.9e-63 245.4 349 43.6
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.1e-61 241.1 338 46.7
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 1.0e-59 234.6 328 49.1
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 3.0e-59 233.0 326 44.8
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 6.7e-59 231.9 352 44.0
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 1.1e-58 231.1 339 45.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 2.6e-58 229.9 333 45.0
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 3.3e-58 229.6 325 45.2
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 3.3e-58 229.6 345 42.9
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 5.3e-56 222.2 325 46.2
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 7.7e-55 218.4 326 43.6
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 6.5e-54 215.3 342 39.5
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 9.4e-53 211.5 315 44.8
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 1.6e-52 210.7 328 44.5
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 8.0e-52 208.4 364 39.6
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 2.8e-49 199.9 324 42.9
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 1.4e-48 197.6 331 43.2
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 4.1e-48 196.1 323 43.7
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 1.7e-46 190.7 330 42.1
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 2.9e-46 189.9 334 41.9
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 1.1e-45 188.0 335 43.0
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.5e-45 187.6 318 42.5
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 5.5e-45 185.7 155 56.8
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 7.2e-45 185.3 163 54.0
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 9.4e-45 184.9 367 37.1
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 6.1e-44 182.2 330 42.1
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 8.0e-44 181.8 379 39.1
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 1.8e-43 180.6 326 40.8
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 3.0e-43 179.9 326 40.8
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 3.0e-43 179.9 328 37.8
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 5.7e-42 175.6 142 59.2
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 7.5e-42 175.3 141 61.7
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 2.8e-41 173.3 160 55.6
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 3.1e-40 169.9 310 41.0
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 7.7e-39 165.2 232 41.8
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 1.0e-38 164.9 202 45.5
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 1.7e-38 164.1 329 36.8
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 3.8e-38 162.9 255 40.8
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 6.6e-38 162.2 228 46.9
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 2.5e-37 160.2 228 45.6
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 3.3e-37 159.8 338 34.3
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 4.2e-37 159.5 222 44.6
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 4.2e-37 159.5 222 44.6
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 9.5e-37 158.3 170 50.6
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 1.6e-36 157.5 215 44.2
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 3.0e-35 153.3 279 41.9
Medtr5g068540 Medicago truncatula HOM05D000512 ORTHO05D000861 2.6e-34 150.2 215 48.4
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 3.4e-34 149.8 123 59.3
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 3.7e-33 146.4 137 62.0
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.1e-29 134.8 116 56.9
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 1.5e-26 124.4 206 38.8
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 2.6e-26 123.6 206 38.8
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 4.4e-26 122.9 206 38.8
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 1.4e-24 117.9 153 44.4
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 4.6e-23 112.8 167 41.9
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 8.6e-22 108.6 116 58.6
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 5.4e-16 89.4 102 50.0
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 9.2e-16 88.6 166 39.8
HPP92_005509 Vanilla planifolia HOM05D001109 ORTHO05D001051 7.1e-08 62.4 93 37.6
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 1.2e-07 61.6 141 29.8
THA.LOC104798699 Tarenaya hassleriana HOM05D002301 ORTHO05D002316 1.2e-07 61.6 136 30.9
Mapoly0005s0112 Marchantia polymorpha HOM05D001109 ORTHO05D000739 2.1e-07 60.8 133 29.3
Mapoly0005s0113 Marchantia polymorpha HOM05D001109 ORTHO05D000739 2.1e-07 60.8 133 29.3
FAN05G5095 Fragaria x ananassa HOM05D002301 ORTHO05D002316 3.5e-07 60.1 135 30.4
Haze_17186 Corylus avellana HOM05D002301 ORTHO05D002316 1.0e-06 58.5 135 28.9
TAR636G2772 Trochodendron aralioides HOM05D002301 ORTHO05D002316 1.0e-06 58.5 133 25.6
TAR636G3408 Trochodendron aralioides HOM05D002301 ORTHO05D002316 1.0e-06 58.5 133 25.6
CSS0010196 Camellia sinensis var. sinensis HOM05D002301 ORTHO05D002316 1.3e-06 58.2 135 27.4
Cpa.g.sc107.88 Carica papaya HOM05D002301 ORTHO05D002316 1.3e-06 58.2 136 30.1
Cfa001363 Carpinus fangiana HOM05D002301 ORTHO05D002316 1.7e-06 57.8 135 29.6
Nn2g11398 Nelumbo nucifera HOM05D002301 ORTHO05D002316 1.7e-06 57.8 135 26.7
Prupe.2G298800 Prunus persica HOM05D002301 ORTHO05D002316 1.7e-06 57.8 111 35.1
ATR0680G217 Amborella trichopoda HOM05D002301 ORTHO05D002316 2.3e-06 57.4 131 26.7
Lj2g0012008 Lotus japonicus HOM05D002301 ORTHO05D002316 2.3e-06 57.4 136 30.1
HanXRQChr16g0510521 Helianthus annuus HOM05D002301 ORTHO05D002316 3.0e-06 57.0 138 29.7
FvH4_6g31310 Fragaria vesca HOM05D002301 ORTHO05D002316 5.1e-06 56.2 135 29.6
Lsat_1_v5_gn_2_72960 Lactuca sativa HOM05D000865 ORTHO05D000739 5.1e-06 56.2 134 29.9
CDE05G0127 Ceratophyllum demersum HOM05D001109 ORTHO05D001051 6.6e-06 55.8 130 29.2
AUR62012209 Chenopodium quinoa HOM05D002301 ORTHO05D002316 6.6e-06 55.8 151 28.5
BcaC04g23510 Brassica carinata HOM05D002301 ORTHO05D002316 8.6e-06 55.5 135 26.7
AUR62022842 Chenopodium quinoa HOM05D002301 ORTHO05D002316 8.6e-06 55.5 151 28.5
RcHm_v2.0_Chr2g0138051 Rosa chinensis HOM05D002301 ORTHO05D002316 8.6e-06 55.5 217 27.6
SMO351G0155 Selaginella moellendorffii HOM05D001109 ORTHO05D002316 8.6e-06 55.5 90 36.7
Solyc03g005720.3 Solanum lycopersicum HOM05D001109 ORTHO05D001051 8.6e-06 55.5 132 28.8


User provided reference genes

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