Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.7e-90 335.9 160 100.0
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.0e-83 312.4 160 90.6
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.6e-78 295.4 160 84.4
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 6.3e-77 290.8 159 83.6
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 4.3e-73 278.1 160 79.4
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.4e-71 273.1 160 78.1
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.4e-71 273.1 160 78.1
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.8e-71 272.7 160 77.5
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 8.3e-69 263.8 160 75.6
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-65 252.3 160 71.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-65 252.3 160 71.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 4.3e-65 251.5 160 71.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.2e-64 250.0 160 70.6
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 4.7e-64 248.1 165 70.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 4.7e-64 248.1 160 73.8
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 6.2e-64 247.7 165 72.1
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 6.2e-64 247.7 164 73.2
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 8.0e-64 247.3 165 70.9
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.1e-63 246.9 165 70.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.1e-63 246.9 165 70.9
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.4e-63 246.5 165 70.3
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.8e-63 246.1 165 70.3
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.3e-63 245.7 160 72.5
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.0e-63 245.0 160 73.1
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 5.2e-63 244.6 165 70.3
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 5.2e-63 244.6 165 69.7
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 6.8e-63 244.2 144 76.4
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 8.9e-63 243.8 160 73.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.2e-62 243.4 165 70.9
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 4.4e-62 241.5 144 76.4
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 5.8e-62 241.1 157 70.1
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 5.8e-62 241.1 165 67.9
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 9.8e-62 240.4 160 68.1
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 9.8e-62 240.4 165 68.5
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 9.8e-62 240.4 165 68.5
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.8e-62 240.4 144 76.4
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.3e-61 240.0 165 69.1
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.7e-61 239.6 165 68.5
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.7e-61 239.6 165 70.3
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.9e-61 238.8 165 69.7
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.9e-61 238.8 144 75.0
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.9e-61 238.0 142 73.9
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.9e-61 238.0 142 73.9
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 4.9e-61 238.0 143 74.1
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 6.4e-61 237.7 165 67.3
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 6.4e-61 237.7 165 66.7
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 8.3e-61 237.3 143 74.8
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.4e-60 236.5 143 74.1
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.4e-60 236.5 146 72.6
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.4e-60 235.7 139 75.5
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 2.4e-60 235.7 161 66.5
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 2.4e-60 235.7 143 74.1
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.4e-60 235.7 161 68.3
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.2e-60 235.3 144 75.0
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 3.2e-60 235.3 161 69.6
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.1e-60 235.0 148 71.6
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 7.0e-60 234.2 165 68.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 9.2e-60 233.8 143 74.1
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 9.2e-60 233.8 165 67.9
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.2e-59 233.4 165 67.3
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.6e-59 233.0 144 70.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.6e-59 233.0 143 72.7
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.6e-59 233.0 143 72.7
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.6e-59 233.0 143 72.7
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.1e-59 232.6 143 72.7
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.1e-59 232.6 165 64.8
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 3.5e-59 231.9 165 66.1
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 3.5e-59 231.9 144 71.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 3.5e-59 231.9 143 71.3
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.6e-59 231.5 144 71.5
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 4.6e-59 231.5 142 71.8
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 6.0e-59 231.1 165 64.2
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 6.0e-59 231.1 161 65.2
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 6.0e-59 231.1 165 64.2
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 6.0e-59 231.1 165 64.2
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 6.0e-59 231.1 142 73.2
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.0e-59 231.1 140 73.6
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 7.8e-59 230.7 165 65.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.3e-58 229.9 165 64.8
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.3e-58 229.9 165 64.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.3e-58 229.9 165 64.2
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.3e-58 229.9 165 64.2
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.3e-58 229.9 165 65.5
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.7e-58 229.6 160 66.9
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 3.0e-58 228.8 143 69.9
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 3.0e-58 228.8 143 69.9
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 3.9e-58 228.4 165 67.9
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 5.1e-58 228.0 140 71.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 5.1e-58 228.0 165 64.2
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 5.1e-58 228.0 143 71.3
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 8.6e-58 227.3 143 69.2
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.5e-57 226.5 165 62.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-57 226.5 143 71.3
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-57 225.7 143 69.9
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 7.3e-57 224.2 143 72.0
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 7.3e-57 224.2 146 69.2
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 7.3e-57 224.2 146 69.2
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 9.5e-57 223.8 142 69.7
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.1e-56 222.6 143 70.6
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 7.5e-54 214.2 124 78.2
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 2.9e-53 212.2 140 67.9
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.9e-53 211.5 144 65.3
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 6.4e-53 211.1 136 67.6
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 8.3e-53 210.7 144 66.0
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 8.3e-53 210.7 160 58.8
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 4.1e-52 208.4 159 60.4
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 5.4e-52 208.0 139 66.2
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 5.4e-52 208.0 144 65.3
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.2e-51 206.8 141 65.2
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.7e-51 205.7 158 58.9
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 3.5e-51 205.3 165 60.0
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 7.8e-51 204.1 163 58.9
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.0e-50 203.8 157 59.9
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 9.5e-49 197.2 143 63.6
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.8e-46 188.0 115 75.7
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 3.9e-42 175.3 165 53.9
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 9.6e-41 170.6 123 64.2
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.7e-40 168.3 157 49.0
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.1e-39 167.2 157 49.0
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.1e-39 165.6 124 62.1
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 2.2e-37 159.5 123 57.7
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.9e-37 158.3 145 53.1
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 4.2e-36 155.2 162 51.9
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 2.1e-35 152.9 103 65.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 4.6e-35 151.8 127 56.7
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.5e-33 146.7 175 49.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-33 146.0 175 49.7
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 2.5e-33 146.0 163 46.6
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.4e-31 140.2 159 44.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.2e-30 137.1 90 68.9
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.3e-29 133.7 162 45.1
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.3e-29 133.7 88 68.2
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 7.9e-27 124.4 165 42.4
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.3e-24 117.1 163 41.7
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.8e-24 115.9 124 50.0
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 6.0e-19 98.2 67 71.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.5e-17 92.8 142 38.7
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.2e-13 79.7 61 57.4
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 5.5e-12 75.1 53 64.2
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.5e-09 66.2 120 32.5
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.7e-08 62.4 58 50.0
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 6.3e-08 61.6 49 55.1
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 3.1e-07 59.3 62 48.4
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 5.9e-06 55.1 42 59.5


User provided reference genes

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