Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g058720 Pisum sativum HOM05D001995 ORTHO05D001952 1.5e-181 639.4 327 100.0
Medtr8g015480 Medicago truncatula HOM05D001995 ORTHO05D001952 5.3e-62 242.3 406 43.1
Ca_23288_v3 Cicer arietinum L. HOM05D001995 ORTHO05D001952 5.8e-61 238.8 390 43.3
Psat4g192520 Pisum sativum HOM05D001995 ORTHO05D001952 1.3e-60 237.7 308 51.0
TPR.G8759 Trifolium pratense HOM05D001995 ORTHO05D001952 2.2e-60 236.9 405 42.5
VMungo0331G0258 Vigna mungo HOM05D001995 ORTHO05D001952 1.4e-43 181.0 389 37.8
Psat7g126680 Pisum sativum HOM05D006843 ORTHO05D008517 1.6e-42 177.6 228 50.0
Glyma.08G197500 Glycine max HOM05D001995 ORTHO05D001952 4.7e-42 176.0 406 37.2
Glyma.07G013500 Glycine max HOM05D001995 ORTHO05D001952 1.3e-36 157.9 374 35.8
Phvul.010G142900 Phaseolus vulgaris HOM05D001995 ORTHO05D001952 8.0e-34 148.7 381 32.8
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 2.1e-26 124.0 94 75.5
Lalb_Chr25g0280491 Lupinus albus HOM05D001995 ORTHO05D001952 8.8e-25 118.6 170 44.7
Glyma.17G215350 Glycine max HOM05D001995 ORTHO05D001952 2.9e-20 103.6 129 51.9
Potri.003G045000 Populus trichocarpa HOM05D001995 ORTHO05D001952 1.0e-17 95.1 141 41.1
Lj3g0013066 Lotus japonicus HOM05D001995 ORTHO05D001952 2.3e-17 94.0 299 34.1
Nn8g38970 Nelumbo nucifera HOM05D001995 ORTHO05D001952 2.6e-16 90.5 179 32.4
Sabra03G0021700 Salix brachista HOM05D001995 ORTHO05D001952 3.4e-16 90.1 150 38.0
Gohir.D05G134900 Gossypium hirsutum HOM05D001995 ORTHO05D001952 9.8e-16 88.6 159 38.4
Dinv30408 Davidia involucrata HOM05D001995 ORTHO05D001952 1.3e-15 88.2 141 39.0
Psat5g183720 Pisum sativum HOM05D000079 ORTHO05D000211 1.3e-15 88.2 45 97.8
Atru.chr1.3602 Acer truncatum HOM05D001995 ORTHO05D001952 2.8e-15 87.0 151 37.1
Gorai.009G138600 Gossypium raimondii HOM05D001995 ORTHO05D001952 2.8e-15 87.0 159 39.0
PSO210G0260 Papaver somniferum HOM05D001995 ORTHO05D001952 3.7e-15 86.7 57 68.4
Manes.04G136600 Manihot esculenta HOM05D001995 ORTHO05D001952 4.9e-15 86.3 122 46.7
CSS0007012 Camellia sinensis var. sinensis HOM05D001995 ORTHO05D001952 6.3e-15 85.9 81 54.3
RcHm_v2.0_Chr2g0141891 Rosa chinensis HOM05D001995 ORTHO05D001952 6.3e-15 85.9 148 37.2
PSO210G6919 Papaver somniferum HOM05D001995 ORTHO05D001952 2.4e-14 84.0 57 68.4
Duzib192G1016 Durio zibethinus HOM05D001995 ORTHO05D001952 5.4e-14 82.8 158 36.1
Thecc.06G104900 Theobroma cacao HOM05D001995 ORTHO05D001952 5.4e-14 82.8 188 33.0
COL.COLO4_30566 Corchorus olitorius HOM05D001995 ORTHO05D001952 1.6e-13 81.3 94 46.8
Gohir.A05G132932 Gossypium hirsutum HOM05D001995 ORTHO05D001952 1.6e-13 81.3 224 33.0
Prupe.3G054300 Prunus persica HOM05D001995 ORTHO05D001952 1.6e-13 81.3 100 43.0
TAR626G1173 Trochodendron aralioides HOM05D001995 ORTHO05D001952 2.0e-13 80.9 71 59.2
Gohir.A09G080800 Gossypium hirsutum HOM05D001995 ORTHO05D001952 2.7e-13 80.5 159 34.0
Dinv38742 Davidia involucrata HOM05D001995 ORTHO05D001952 4.5e-13 79.7 77 51.9
Ciclev10024969m.g Citrus clementina HOM05D001995 ORTHO05D001952 7.7e-13 79.0 73 54.8
CsaV3_7G034990 Cucumis sativus L. HOM05D001995 ORTHO05D001952 1.3e-12 78.2 161 41.0
MBI04_g12187_MAGBIO Magnolia biondii HOM05D001995 ORTHO05D001952 2.3e-12 77.4 120 42.5
MBI01_g16594_MAGBIO Magnolia biondii HOM05D001995 ORTHO05D001952 2.9e-12 77.0 82 47.6
Sed0023967 Sechium edule HOM05D001995 ORTHO05D001952 2.9e-12 77.0 52 67.3
Duzib235G0132 Durio zibethinus HOM05D001995 ORTHO05D001952 3.8e-12 76.6 162 32.7
FvH4_6g32780 Fragaria vesca HOM05D001995 ORTHO05D001952 5.0e-12 76.3 111 43.2
FAN14G3209 Fragaria x ananassa HOM05D001995 ORTHO05D001952 5.0e-12 76.3 111 43.2
TAR383G0578 Trochodendron aralioides HOM05D001995 ORTHO05D001952 5.0e-12 76.3 160 33.8
Gohir.D09G080800 Gossypium hirsutum HOM05D001995 ORTHO05D001952 6.6e-12 75.9 100 46.0
Gorai.006G096400 Gossypium raimondii HOM05D001995 ORTHO05D001952 6.6e-12 75.9 100 46.0
QL05p017552 Quercus lobata HOM05D001995 ORTHO05D001952 6.6e-12 75.9 161 32.3
Duzib235G1352 Durio zibethinus HOM05D001995 ORTHO05D001952 1.1e-11 75.1 253 30.0
Aqoxy408s003 Aquilegia oxysepala HOM05D001995 ORTHO05D001952 1.5e-11 74.7 76 52.6
Aqoxy7G03945 Aquilegia oxysepala HOM05D001995 ORTHO05D001952 1.5e-11 74.7 76 52.6
Sopen06g021960 Solanum pennellii HOM05D001995 ORTHO05D001952 1.5e-11 74.7 108 42.6
CAN.G635.31 Capsicum annuum HOM05D001995 ORTHO05D001952 1.9e-11 74.3 98 41.8
QL05p017252 Quercus lobata HOM05D001995 ORTHO05D001952 1.9e-11 74.3 161 33.5
FAN05G1975 Fragaria x ananassa HOM05D001995 ORTHO05D001952 2.5e-11 73.9 68 57.4
Hma1.2p1_2150F.1_g315190 Hydrangea macrophylla HOM05D001995 ORTHO05D001952 2.5e-11 73.9 95 45.3
MSTRG.9491 Avicennia marina HOM05D001995 ORTHO05D001952 4.2e-11 73.2 49 67.3
CiPaw.01G228300 Carya illinoinensis HOM05D001995 ORTHO05D001952 4.2e-11 73.2 273 30.0
Peaxi162Scf00207g01153 Petunia axillaris HOM05D001995 ORTHO05D001952 4.2e-11 73.2 168 32.1
Os01g0566100 Oryza sativa ssp. japonica HOM05D001995 ORTHO05D001952 5.6e-11 72.8 85 47.1
CARHR097240 Cardamine hirsuta HOM05D001995 ORTHO05D001952 7.2e-11 72.4 102 40.2
Nitab4.5_0000300g0090 Nicotiana tabacum HOM05D001995 ORTHO05D001952 9.5e-11 72.0 98 41.8
Os06g0142600 Oryza sativa ssp. japonica HOM05D001995 ORTHO05D001952 9.5e-11 72.0 85 48.2
Thhalv10020453m.g Eutrema salsugineum HOM05D001995 ORTHO05D001952 1.2e-10 71.6 84 46.4
PGSC0003DMG400004837 Solanum tuberosum HOM05D001995 ORTHO05D001952 1.2e-10 71.6 108 42.6
ClCG09G000470 Citrullus lanatus HOM05D001995 ORTHO05D001952 1.6e-10 71.2 166 33.7
Solyc06g062480.4 Solanum lycopersicum HOM05D001995 ORTHO05D001952 1.6e-10 71.2 108 41.7
Sp3g19380 Schrenkiella parvula HOM05D001995 ORTHO05D001952 2.1e-10 70.9 83 45.8
BcaB04g19160 Brassica carinata HOM05D001995 ORTHO05D001952 2.8e-10 70.5 40 75.0
BcaB04g20595 Brassica carinata HOM05D001995 ORTHO05D001952 3.6e-10 70.1 40 75.0
BcaC05g28179 Brassica carinata HOM05D001995 ORTHO05D001952 3.6e-10 70.1 40 75.0
A05p27280 Brassica napus HOM05D001995 ORTHO05D001952 3.6e-10 70.1 40 75.0
C05p42190 Brassica napus HOM05D001995 ORTHO05D001952 3.6e-10 70.1 40 75.0
BolC5t32947H Brassica oleracea HOM05D001995 ORTHO05D001952 3.6e-10 70.1 40 75.0
BraA05t21620Z Brassica rapa HOM05D001995 ORTHO05D001952 3.6e-10 70.1 40 75.0
CDE04G2418 Ceratophyllum demersum HOM05D001995 ORTHO05D001952 3.6e-10 70.1 88 44.3
Sed0022434 Sechium edule HOM05D001995 ORTHO05D001952 3.6e-10 70.1 216 30.6
Nitab4.5_0002656g0030 Nicotiana tabacum HOM05D001995 ORTHO05D001952 4.7e-10 69.7 98 41.8
CDE02G4466 Ceratophyllum demersum HOM05D001995 ORTHO05D001952 6.1e-10 69.3 90 42.2
AL3G35380 Arabidopsis lyrata HOM05D001995 ORTHO05D001952 8.0e-10 68.9 83 45.8
Dinv10639 Davidia involucrata HOM05D001995 ORTHO05D001952 8.0e-10 68.9 94 43.6
HanXRQChr05g0139911 Helianthus annuus HOM05D001995 ORTHO05D001952 8.0e-10 68.9 77 50.6
Oeu052824.2 Olea europaea HOM05D001995 ORTHO05D001952 1.4e-09 68.2 132 35.6
Zm00001eb159890 Zea mays HOM05D001995 ORTHO05D001952 1.4e-09 68.2 63 52.4
Rhsim12G0204400 Rhododendron simsii HOM05D001995 ORTHO05D001952 1.8e-09 67.8 81 45.7
BcaC09g49069 Brassica carinata HOM05D001995 ORTHO05D001952 2.3e-09 67.4 40 72.5
C01p42940 Brassica napus HOM05D001995 ORTHO05D001952 2.3e-09 67.4 40 72.5
BolC1t04237H Brassica oleracea HOM05D001995 ORTHO05D001952 2.3e-09 67.4 40 72.5
Carub.0003s2135 Capsella rubella HOM05D001995 ORTHO05D001952 2.3e-09 67.4 83 47.0
BcaC01g03510 Brassica carinata HOM05D001995 ORTHO05D001952 3.0e-09 67.0 49 67.3
BolC3t17448H Brassica oleracea HOM05D001995 ORTHO05D001952 3.0e-09 67.0 49 67.3
BraA01t03472Z Brassica rapa HOM05D001995 ORTHO05D001952 3.0e-09 67.0 40 72.5
Cc04_g02320 Coffea canephora HOM05D001995 ORTHO05D001952 3.0e-09 67.0 46 65.2
Medtr3g049150 Medicago truncatula HOM05D000079 ORTHO05D000211 3.0e-09 67.0 44 77.3
A01p33600 Brassica napus HOM05D001995 ORTHO05D001952 4.0e-09 66.6 83 43.4
HanXRQChr04g0118841 Helianthus annuus HOM05D001995 ORTHO05D001952 5.2e-09 66.2 128 29.7
Oeu052823.2 Olea europaea HOM05D001995 ORTHO05D001952 5.2e-09 66.2 132 35.6
TPR.G13566 Trifolium pratense HOM05D000079 ORTHO05D000211 5.2e-09 66.2 44 72.7
A03p42190 Brassica napus HOM05D001995 ORTHO05D001952 6.8e-09 65.9 81 46.9
BraA03t13372Z Brassica rapa HOM05D001995 ORTHO05D001952 6.8e-09 65.9 81 46.9
MELO3C024410.2 Cucumis melo HOM05D001995 ORTHO05D001952 6.8e-09 65.9 282 26.2
BolC3t17447H Brassica oleracea HOM05D001995 ORTHO05D001952 8.9e-09 65.5 40 72.5
Medtr3g049140 Medicago truncatula HOM05D000079 ORTHO05D000211 8.9e-09 65.5 44 75.0
TPR.G13551 Trifolium pratense HOM05D000079 ORTHO05D000211 8.9e-09 65.5 44 75.0
C03p51640 Brassica napus HOM05D001995 ORTHO05D001952 1.5e-08 64.7 115 40.9
Ca_14637_v3 Cicer arietinum L. HOM05D000079 ORTHO05D000211 1.5e-08 64.7 46 69.6
Aqoxy7G01345 Aquilegia oxysepala HOM05D001995 ORTHO05D001952 2.6e-08 63.9 85 44.7
ATR0789G042 Amborella trichopoda HOM05D001995 ORTHO05D001952 3.4e-08 63.5 82 48.8
AT3G21320 Arabidopsis thaliana HOM05D001995 ORTHO05D001952 3.4e-08 63.5 72 45.8
Ca_13193_v3 Cicer arietinum L. HOM05D001995 ORTHO05D001952 3.4e-08 63.5 169 29.0
GSVIVG01035337001 Vitis vinifera HOM05D001995 ORTHO05D001952 3.4e-08 63.5 183 26.2
vmacro17005 Vaccinium macrocarpon HOM05D001995 ORTHO05D001952 4.4e-08 63.2 157 32.5
BcaB06g26224 Brassica carinata HOM05D001995 ORTHO05D001952 5.7e-08 62.8 72 51.4
Sopen11g028770 Solanum pennellii HOM05D001995 ORTHO05D001952 5.7e-08 62.8 119 34.5
ECA232G2066 Erigeron canadensis HOM05D001995 ORTHO05D001952 7.5e-08 62.4 134 35.8
Gohir.A07G022156 Gossypium hirsutum HOM05D001995 ORTHO05D001952 7.5e-08 62.4 182 28.6
Haze_10972 Corylus avellana HOM05D001995 ORTHO05D001952 9.8e-08 62.0 79 43.0
Solyc11g070100.2 Solanum lycopersicum HOM05D001995 ORTHO05D001952 9.8e-08 62.0 119 34.5
Actinidia09014 Actinidia chinensis HOM05D001995 ORTHO05D001952 1.3e-07 61.6 89 43.8
Gohir.D07G023300 Gossypium hirsutum HOM05D001995 ORTHO05D001952 1.3e-07 61.6 182 28.6
Lsat_1_v5_gn_6_7561 Lactuca sativa HOM05D001995 ORTHO05D001952 1.3e-07 61.6 45 62.2
QL02p001764 Quercus lobata HOM05D001995 ORTHO05D001952 1.3e-07 61.6 184 25.5
SalBow7G4453 Salvia bowleyana HOM05D001995 ORTHO05D001952 1.3e-07 61.6 47 61.7
Eucgr.F03094 Eucalyptus grandis HOM05D001995 ORTHO05D001952 1.7e-07 61.2 77 45.5
Prupe.1G416000 Prunus persica HOM05D001995 ORTHO05D001952 1.7e-07 61.2 167 28.7
TPR.G4546 Trifolium pratense HOM05D000079 ORTHO05D000211 2.2e-07 60.8 44 68.2
CANSAT35G0680 Cannabis sativa HOM05D001995 ORTHO05D001952 2.9e-07 60.5 154 30.5
THA.LOC104817941 Tarenaya hassleriana HOM05D001995 ORTHO05D001952 3.7e-07 60.1 118 37.3
Thecc.09G050200 Theobroma cacao HOM05D001995 ORTHO05D001952 3.7e-07 60.1 172 29.1
Actinidia39127 Actinidia chinensis HOM05D001995 ORTHO05D001952 4.9e-07 59.7 36 75.0
Haze_15898 Corylus avellana HOM05D001995 ORTHO05D001952 4.9e-07 59.7 79 43.0
HanXRQChr02g0047961 Helianthus annuus HOM05D001995 ORTHO05D001952 4.9e-07 59.7 112 35.7
ECA233G1253 Erigeron canadensis HOM05D001995 ORTHO05D001952 6.4e-07 59.3 119 31.1
CiPaw.16G030600 Carya illinoinensis HOM05D001995 ORTHO05D001952 8.3e-07 58.9 163 25.8
CSS0012774 Camellia sinensis var. sinensis HOM05D001995 ORTHO05D001952 1.1e-06 58.5 127 32.3
CSS0015533 Camellia sinensis var. sinensis HOM05D001995 ORTHO05D001952 1.1e-06 58.5 127 32.3
CARHR099560 Cardamine hirsuta HOM05D001995 ORTHO05D001952 1.1e-06 58.5 69 49.3
CiPaw.15G042600 Carya illinoinensis HOM05D001995 ORTHO05D001952 1.1e-06 58.5 172 29.1
AUR62031978 Chenopodium quinoa HOM05D001995 ORTHO05D001952 1.1e-06 58.5 109 37.6
Gohir.D07G023200 Gossypium hirsutum HOM05D001995 ORTHO05D001952 1.4e-06 58.2 174 28.2
Gorai.001G024000 Gossypium raimondii HOM05D001995 ORTHO05D001952 1.4e-06 58.2 174 28.2
Sabra06G0182100 Salix brachista HOM05D001995 ORTHO05D001952 1.4e-06 58.2 85 41.2
HPP92_005219 Vanilla planifolia HOM05D001995 ORTHO05D001952 1.4e-06 58.2 65 52.3
Psat5g037560 Pisum sativum HOM05D001995 ORTHO05D001952 1.8e-06 57.8 140 31.4
TPR.G13003 Trifolium pratense HOM05D001995 ORTHO05D001952 1.8e-06 57.8 174 29.3
Zm00001eb297250 Zea mays HOM05D001995 ORTHO05D001952 1.8e-06 57.8 50 58.0
Potri.006G233800 Populus trichocarpa HOM05D001995 ORTHO05D001952 2.4e-06 57.4 152 27.6
PGR102G1682 Punica granatum HOM05D001995 ORTHO05D001952 3.2e-06 57.0 55 54.5
FvH4_2g32300 Fragaria vesca HOM05D001995 ORTHO05D001952 4.1e-06 56.6 148 30.4
TPR.G25357 Trifolium pratense HOM05D001995 ORTHO05D001952 4.1e-06 56.6 139 30.9
Duzib187G1876 Durio zibethinus HOM05D001995 ORTHO05D001952 7.0e-06 55.8 185 27.6
FAN20G2425 Fragaria x ananassa HOM05D001995 ORTHO05D001952 7.0e-06 55.8 192 26.6
Glyma.04G050200 Glycine max HOM05D001995 ORTHO05D001952 7.0e-06 55.8 144 31.9
Gorai.001G024100 Gossypium raimondii HOM05D001995 ORTHO05D001952 7.0e-06 55.8 179 28.5
THA.LOC104810626 Tarenaya hassleriana HOM05D001995 ORTHO05D001952 7.0e-06 55.8 36 66.7
TWI34G0767 Tripterygium wilfordii HOM05D001995 ORTHO05D001952 9.2e-06 55.5 169 29.6


User provided reference genes

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