Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 8.1e-178 627.1 346 100.0
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 4.6e-133 478.4 329 85.7
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 9.1e-121 437.6 330 75.8
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 3.8e-119 432.2 329 75.7
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 5.0e-119 431.8 324 76.2
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.6e-112 410.2 328 71.6
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 9.4e-110 401.0 337 72.7
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.3e-103 380.6 306 73.2
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 2.9e-95 352.8 328 67.4
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 9.2e-89 331.3 337 63.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 5.0e-87 325.5 330 64.5
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.3e-74 284.3 345 58.3
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.7e-74 283.9 182 83.0
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 6.4e-74 282.0 349 54.7
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.1e-73 281.2 348 57.2
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.1e-73 281.2 348 57.8
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 3.2e-73 279.6 351 55.8
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 9.2e-73 278.1 348 54.3
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.3e-71 274.2 371 52.3
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 2.3e-71 273.5 346 55.8
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 2.5e-70 270.0 347 54.2
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 7.3e-70 268.5 345 54.8
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.2e-69 267.7 350 54.0
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.2e-69 267.7 347 55.6
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.8e-68 263.8 363 52.1
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 4.0e-68 262.7 348 54.0
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 4.0e-68 262.7 347 55.6
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 4.0e-68 262.7 348 55.5
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 6.8e-68 261.9 345 54.2
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.5e-67 260.8 347 54.8
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.2e-66 256.9 347 54.5
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.2e-66 256.9 347 54.8
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.9e-66 256.5 349 53.6
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.4e-65 254.2 347 54.2
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 5.4e-65 252.3 347 54.8
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 7.1e-65 251.9 349 53.3
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 3.5e-64 249.6 347 54.5
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.3e-63 247.7 351 55.0
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 3.0e-63 246.5 340 53.8
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 5.1e-63 245.7 206 73.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.5e-62 243.4 348 51.4
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 5.6e-62 242.3 343 52.8
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 9.5e-62 241.5 343 52.8
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.8e-61 240.0 357 50.7
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 2.0e-59 233.8 361 49.3
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 2.0e-59 233.8 345 50.7
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 4.9e-58 229.2 270 57.8
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 8.4e-58 228.4 346 50.0
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 7.1e-57 225.3 278 56.8
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 7.1e-57 225.3 350 47.7
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 7.1e-57 225.3 350 47.7
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 2.1e-56 223.8 358 47.8
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 2.1e-56 223.8 346 50.0
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 7.8e-56 221.9 247 62.8
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 7.8e-56 221.9 247 60.7
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.3e-55 221.1 276 57.6
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.7e-55 220.7 347 48.1
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.7e-55 220.7 217 65.9
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.9e-55 219.5 247 60.3
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 3.9e-55 219.5 265 57.7
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.1e-54 218.0 325 52.3
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.6e-53 214.2 292 55.1
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 4.7e-53 212.6 302 53.3
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 8.1e-53 211.8 331 51.1
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 4.4e-51 206.1 257 57.6
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 4.4e-51 206.1 271 57.6
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 9.9e-51 204.9 260 57.7
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 9.9e-51 204.9 276 55.1
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.2e-50 203.8 269 56.1
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.2e-50 203.8 206 67.0
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 2.9e-50 203.4 270 56.3
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.8e-50 203.0 255 58.4
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 6.4e-50 202.2 194 70.1
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 6.4e-50 202.2 270 56.3
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 6.4e-50 202.2 270 56.3
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 6.4e-50 202.2 386 40.7
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-49 201.4 269 55.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.1e-49 201.4 270 55.2
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.1e-49 201.4 269 55.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.1e-49 201.4 336 48.5
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.9e-49 200.7 231 59.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.9e-49 200.7 270 55.6
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.4e-49 200.3 206 65.5
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.2e-49 199.9 265 54.7
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 5.4e-49 199.1 254 58.3
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 5.4e-49 199.1 263 54.4
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 7.1e-49 198.7 341 50.4
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 7.1e-49 198.7 270 54.8
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 9.3e-49 198.4 270 54.8
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.6e-48 197.6 222 62.2
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.1e-48 197.2 276 53.3
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 4.6e-48 196.1 272 56.2
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 4.6e-48 196.1 272 56.2
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 4.6e-48 196.1 272 56.2
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.3e-47 194.5 288 47.2
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.3e-47 194.5 154 67.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.6e-45 187.6 228 61.0
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 4.8e-45 186.0 273 53.8
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 4.8e-45 186.0 335 45.7
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 3.1e-44 183.3 222 57.7
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.2e-43 181.4 323 47.4
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 9.9e-43 178.3 219 58.0
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 7.9e-40 168.7 173 56.1
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.3e-37 161.4 154 55.8
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 4.0e-36 156.4 268 49.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.0e-35 154.1 269 49.8
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 7.6e-27 125.6 236 46.6
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 3.0e-23 113.6 269 43.9
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.0e-23 113.6 153 39.9
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 3.9e-23 113.2 303 36.0
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.3e-22 110.2 141 43.3
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 4.8e-21 106.3 140 36.4
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 6.3e-21 105.9 144 43.1
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.3e-20 102.8 86 58.1
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.9e-20 102.4 156 37.8
TPR.G28257 Trifolium pratense HOM05D006243 ORTHO05D007688 2.1e-16 90.9 59 78.0
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.0e-15 88.6 71 63.4
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.1e-12 77.0 70 51.4
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 9.1e-12 75.5 129 37.2
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.8e-10 70.1 130 46.9


User provided reference genes

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