Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 2.5e-139 498.8 259 100.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-131 473.4 259 94.6
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 9.5e-131 470.3 259 94.2
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 2.8e-127 458.8 259 91.9
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 5.4e-126 454.5 259 90.0
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.6e-125 453.0 259 89.6
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 1.3e-124 449.9 259 88.8
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.7e-124 449.5 256 90.6
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 6.6e-124 447.6 259 88.8
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.6e-122 443.0 259 87.6
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.8e-122 442.2 259 87.6
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 8.9e-121 437.2 259 85.3
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.6e-120 435.6 259 84.2
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.7e-117 425.6 259 82.6
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 6.6e-116 421.0 259 81.9
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.1e-115 420.2 259 80.7
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 3.6e-114 415.2 259 79.9
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 6.2e-114 414.5 259 80.3
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 8.0e-114 414.1 259 80.3
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.8e-113 412.9 259 79.5
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 4.0e-113 411.8 259 79.9
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 4.0e-113 411.8 259 78.8
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 5.2e-113 411.4 259 78.4
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 5.2e-113 411.4 258 79.1
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.8e-113 411.0 259 79.2
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.2e-112 410.2 259 77.6
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 2.0e-112 409.5 257 77.8
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 2.0e-112 409.5 259 77.6
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.4e-112 408.7 259 78.8
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 5.8e-112 407.9 259 78.0
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 7.5e-112 407.5 259 79.2
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 9.8e-112 407.1 259 76.8
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 2.9e-111 405.6 259 76.4
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 2.9e-111 405.6 259 77.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 8.3e-111 404.1 259 77.6
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.4e-110 403.3 259 76.1
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.9e-110 402.9 259 76.4
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 1.9e-110 402.9 259 78.0
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 2.4e-110 402.5 259 76.1
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 2.4e-110 402.5 259 75.3
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 5.4e-110 401.4 257 75.9
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 9.2e-110 400.6 257 76.7
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 9.2e-110 400.6 258 77.9
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.7e-109 399.1 257 75.9
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 3.5e-109 398.7 259 77.6
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 6.0e-109 397.9 259 75.7
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.0e-108 397.1 259 78.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.0e-108 397.1 257 75.5
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.3e-108 396.0 259 75.7
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.3e-108 396.0 256 76.2
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 3.9e-108 395.2 257 76.3
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.9e-108 395.2 256 76.2
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 5.1e-108 394.8 259 74.5
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 6.6e-108 394.4 256 76.2
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.1e-107 393.7 256 76.2
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.5e-107 393.3 257 75.9
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.9e-107 392.9 259 74.1
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 5.6e-107 391.3 257 75.1
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.1e-106 389.4 270 74.8
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 2.1e-106 389.4 258 74.4
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.8e-106 389.0 257 74.3
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.8e-106 389.0 259 73.7
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 3.6e-106 388.7 259 74.9
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 4.7e-106 388.3 259 74.5
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.8e-105 386.3 257 73.5
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 2.3e-105 386.0 257 73.5
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.3e-105 386.0 259 73.7
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 6.8e-105 384.4 259 74.1
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.2e-104 383.6 260 74.2
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.6e-104 382.5 290 69.0
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.4e-104 382.1 268 70.9
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 4.4e-104 381.7 257 73.5
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.3e-103 380.2 259 73.4
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.2e-103 379.4 257 74.3
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 6.4e-103 377.9 256 73.4
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.1e-102 377.1 238 78.2
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.9e-102 376.3 257 72.4
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.9e-102 376.3 257 72.4
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.4e-102 375.9 238 77.3
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.2e-102 375.6 257 72.4
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 3.2e-102 375.6 257 72.4
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 4.1e-102 375.2 299 65.6
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 3.5e-101 372.1 259 74.1
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 3.3e-99 365.5 324 60.2
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.6e-98 363.2 232 76.3
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.1e-98 362.8 259 72.6
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 3.6e-98 362.1 254 72.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.5e-96 356.7 257 71.2
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.6e-96 355.9 232 76.3
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 4.9e-95 351.7 259 69.9
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 6.0e-93 344.7 279 64.5
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.9e-92 342.0 256 66.8
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 4.7e-90 335.1 255 63.9
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.6e-85 320.1 255 63.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 5.6e-83 311.6 256 59.8
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.6e-82 310.1 244 66.8
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 4.8e-82 308.5 264 63.3
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 6.2e-82 308.1 269 62.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 8.1e-82 307.8 193 78.2
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 4.0e-81 305.4 193 78.2
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 9.0e-81 304.3 235 68.5
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.1e-78 297.4 195 75.4
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.2e-78 295.8 254 58.3
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.1e-77 293.1 254 57.5
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.7e-77 292.7 202 71.3
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 2.1e-74 283.1 194 69.1
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 1.8e-73 280.0 259 59.8
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.8e-73 280.0 259 59.8
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 4.0e-73 278.9 172 77.9
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 1.2e-72 277.3 171 79.5
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.8e-72 275.0 195 68.7
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 7.1e-70 268.1 256 52.3
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 2.1e-69 266.5 259 54.4
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 3.5e-69 265.8 172 76.2
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 6.7e-60 235.0 147 77.6
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.6e-56 223.0 273 52.4
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.0e-55 221.1 171 63.7
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.2e-50 203.4 251 40.6
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.8e-39 166.0 231 43.3
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 6.1e-29 132.1 114 63.2
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 4.0e-28 129.4 123 55.3
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 5.9e-24 115.5 150 48.0
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.2e-21 107.8 66 81.8
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.4e-20 104.4 60 85.0
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.3e-20 103.6 248 31.5
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 4.0e-20 102.8 68 76.5
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 5.2e-20 102.4 140 44.3
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.7e-19 99.0 64 73.4
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 2.2e-18 97.1 68 69.1
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 3.1e-17 93.2 57 78.9
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 2.7e-16 90.1 105 52.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 8.6e-15 85.1 61 68.9
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 1.4e-12 77.8 58 70.7
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 1.7e-10 70.9 181 30.4
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 3.7e-10 69.7 46 67.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-09 68.2 49 67.3
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.6e-08 64.3 144 34.7
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 5.9e-08 62.4 73 43.8
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 6.6e-07 58.9 38 71.1


User provided reference genes

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