Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.6e-85 319.7 200 100.0
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 2.4e-49 199.5 205 58.0
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 6.5e-47 191.4 202 58.9
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 2.8e-29 132.9 200 45.5
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.2e-24 117.5 181 47.0
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 2.7e-24 116.3 180 44.4
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 1.0e-23 114.4 180 45.0
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 2.1e-21 106.7 180 43.9
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 5.4e-17 92.0 122 52.5
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 5.1e-15 85.5 199 35.7
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.5e-14 84.0 156 41.0
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.9e-14 83.6 158 50.0
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.9e-14 83.6 169 37.9
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 1.6e-13 80.5 168 36.9
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 2.1e-13 80.1 93 55.9
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 2.1e-13 80.1 152 39.5
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 2.1e-13 80.1 96 50.0
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.8e-13 79.7 156 37.2
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 3.6e-13 79.3 165 38.2
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 6.2e-13 78.6 138 43.5
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 8.1e-13 78.2 101 49.5
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 1.1e-12 77.8 200 36.5
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.4e-12 77.4 146 42.5
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.8e-12 77.0 158 36.7
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.4e-12 76.6 180 36.7
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 6.8e-12 75.1 192 33.9
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 8.9e-12 74.7 175 41.1
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.2e-11 74.3 112 45.5
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 3.4e-11 72.8 178 33.1
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 3.4e-11 72.8 102 49.0
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 4.4e-11 72.4 115 44.3
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 7.6e-11 71.6 105 43.8
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 7.6e-11 71.6 119 46.2
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 1.7e-10 70.5 114 37.7
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 2.2e-10 70.1 158 34.2
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.2e-10 70.1 96 50.0
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 2.2e-10 70.1 119 45.4
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 3.8e-10 69.3 93 51.6
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 4.9e-10 68.9 97 46.4
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 6.4e-10 68.6 129 43.4
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 6.4e-10 68.6 94 46.8
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 8.4e-10 68.2 96 47.9
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 1.1e-09 67.8 90 46.7
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.4e-09 67.4 90 45.6
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.4e-09 66.6 94 43.6
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.4e-09 66.6 161 33.5
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.4e-09 66.6 161 33.5
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 2.4e-09 66.6 90 45.6
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 2.4e-09 66.6 117 40.2
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 3.2e-09 66.2 87 48.3
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 3.2e-09 66.2 98 44.9
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 4.1e-09 65.9 88 48.9
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.2e-08 64.3 96 44.8
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 1.2e-08 64.3 96 42.7
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 1.2e-08 64.3 123 43.1
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.7e-08 63.2 98 41.8
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 3.5e-08 62.8 96 43.8
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 3.5e-08 62.8 85 47.1
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 3.5e-08 62.8 193 30.6
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.5e-08 62.8 107 42.1
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.5e-08 62.8 96 45.8
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 4.6e-08 62.4 114 43.0
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 6.0e-08 62.0 90 42.2
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 7.8e-08 61.6 89 47.2
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.0e-07 61.2 106 38.7
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.0e-07 61.2 97 44.3
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 1.0e-07 61.2 96 42.7
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.0e-07 61.2 96 42.7
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.0e-07 61.2 96 42.7
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.3e-07 60.8 90 43.3
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.3e-07 60.1 97 42.3
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.3e-07 60.1 96 41.7
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 3.0e-07 59.7 101 42.6
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 3.0e-07 59.7 89 47.2
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 3.9e-07 59.3 105 38.1
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 3.9e-07 59.3 96 41.7
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 6.6e-07 58.5 101 41.6
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 6.6e-07 58.5 101 41.6
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 6.6e-07 58.5 101 41.6
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 6.6e-07 58.5 101 41.6
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 6.6e-07 58.5 101 41.6
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 6.6e-07 58.5 106 37.7
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 6.6e-07 58.5 94 41.5
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 8.7e-07 58.2 105 35.2
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 8.7e-07 58.2 101 40.6
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 8.7e-07 58.2 89 44.9
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 8.7e-07 58.2 101 42.6
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.1e-06 57.8 117 38.5
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.5e-06 56.6 154 32.5
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 4.3e-06 55.8 58 46.6
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 5.6e-06 55.5 71 47.9
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 7.3e-06 55.1 102 38.2
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 9.6e-06 54.7 102 40.2


User provided reference genes

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