Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.1e-228 796.2 392 100.0
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.2e-203 712.2 392 89.3
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.0e-197 691.8 376 90.2
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 9.7e-196 686.8 387 85.3
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 5.3e-194 681.0 392 84.7
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 4.8e-187 657.9 388 82.5
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.8e-186 656.0 388 82.7
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 6.1e-182 641.0 390 80.3
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.5e-180 636.3 414 76.6
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.6e-180 635.6 413 76.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.1e-178 630.2 360 84.7
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.6e-169 599.7 388 77.6
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.6e-169 599.7 388 75.8
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 2.5e-167 592.4 392 74.2
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.8e-165 586.3 392 71.9
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 2.6e-164 582.4 392 73.5
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 3.7e-163 578.6 388 72.4
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 3.7e-163 578.6 397 72.5
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 2.4e-162 575.9 393 70.0
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 4.1e-162 575.1 397 72.5
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 5.4e-162 574.7 391 70.8
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.5e-161 572.0 390 72.6
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.5e-161 572.0 388 72.2
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.0e-161 571.2 388 72.2
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.0e-160 568.2 388 71.6
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 6.6e-160 567.8 391 71.6
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 7.3e-159 564.3 388 70.6
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.6e-158 563.1 419 68.0
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 1.8e-157 559.7 391 69.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 4.0e-157 558.5 391 69.8
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 8.9e-157 557.4 389 68.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 4.4e-156 555.1 394 69.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.3e-155 553.5 394 69.8
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.2e-155 552.7 391 69.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 6.4e-155 551.2 392 68.4
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.4e-154 550.1 448 63.6
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 1.9e-154 549.7 387 69.8
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.4e-154 549.3 403 67.5
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 4.1e-154 548.5 394 69.0
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 4.1e-154 548.5 387 69.8
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.2e-153 547.0 392 67.9
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.1e-153 546.2 390 68.7
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 2.7e-153 545.8 388 69.3
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 3.5e-153 545.4 354 75.7
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.6e-153 545.0 396 66.9
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.0e-152 543.9 394 68.8
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.7e-152 543.1 389 68.4
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.0e-152 542.3 393 67.7
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.0e-152 542.3 392 68.1
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.5e-151 539.3 391 66.5
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 4.3e-151 538.5 394 68.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 4.3e-151 538.5 391 68.0
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.6e-150 536.6 390 67.2
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.6e-150 536.6 388 66.2
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 1.8e-149 533.1 390 67.7
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 2.3e-149 532.7 392 66.8
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 3.1e-149 532.3 394 67.8
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 4.0e-149 531.9 388 67.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 8.9e-149 530.8 390 67.7
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.2e-148 530.4 391 66.0
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.2e-148 530.4 395 65.8
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.3e-147 526.9 391 65.2
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.7e-147 526.6 391 64.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.9e-147 525.8 391 66.0
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.9e-147 525.8 421 63.2
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 6.4e-147 524.6 390 64.9
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 2.4e-146 522.7 469 58.0
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 7.1e-146 521.2 393 65.1
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 7.8e-145 517.7 389 65.8
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 5.1e-144 515.0 386 64.5
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.1e-143 513.8 422 62.3
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 4.3e-143 511.9 385 62.9
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.1e-141 507.3 389 64.3
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.4e-141 506.9 407 61.9
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 4.0e-141 505.4 391 63.4
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 5.8e-140 501.5 367 66.8
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 5.4e-138 495.0 376 66.5
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 2.1e-137 493.0 392 63.8
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.7e-137 492.7 392 62.8
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 8.4e-131 471.1 503 52.1
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.5e-129 465.7 330 69.1
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.3e-128 463.0 251 89.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.5e-127 460.3 381 62.2
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 2.1e-126 456.4 442 55.4
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 8.1e-126 454.5 391 57.5
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.7e-121 439.5 432 55.1
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.1e-119 434.1 392 57.4
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 7.4e-119 431.4 236 89.4
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.3e-118 430.6 385 56.4
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.0e-116 423.3 349 60.5
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.9e-111 406.8 313 63.3
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.5e-106 389.8 290 66.6
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 4.6e-105 385.6 283 65.4
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.8e-102 376.3 272 67.6
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 8.2e-102 374.8 274 65.7
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 2.0e-100 370.2 398 50.3
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 7.2e-98 361.7 397 48.6
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.5e-92 344.0 399 46.1
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 3.0e-88 329.7 392 45.7
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.7e-83 313.9 289 53.6
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.1e-81 307.0 220 67.7
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 9.7e-79 298.1 228 64.0
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 3.7e-78 296.2 484 38.0
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.0e-71 273.9 370 40.5
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 4.1e-69 266.2 193 68.4
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 6.1e-65 252.3 324 41.0
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 6.6e-59 232.3 139 77.0
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 3.9e-43 179.9 104 81.7
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 1.8e-40 171.0 135 64.4
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 5.8e-39 166.0 185 50.8
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.9e-37 161.0 532 25.2
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 4.1e-37 159.8 109 69.7
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.6e-36 157.9 171 53.8
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-34 151.4 80 93.8
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 8.1e-33 145.6 126 62.7
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-32 144.4 116 62.1
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-32 144.1 116 62.1
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-32 144.1 116 62.1
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-32 144.1 116 62.1
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.0e-32 143.3 114 63.2
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-31 141.7 116 61.2
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 9.9e-31 138.7 264 38.3
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 9.9e-31 138.7 79 83.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-30 138.3 106 62.3
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.8e-30 136.7 79 77.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.4e-29 132.9 93 66.7
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-25 121.7 69 78.3
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 2.1e-25 120.9 109 56.9
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.2e-25 119.4 69 76.8
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-22 110.2 71 73.2
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-21 108.2 62 77.4
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-21 108.2 62 77.4
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.4e-21 107.5 62 77.4
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 7.8e-20 102.4 129 48.1
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.9e-19 100.1 62 74.2
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 6.6e-19 99.4 72 66.7
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.5e-18 97.4 62 71.0
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.3e-18 97.1 60 75.0
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-16 91.7 53 84.9
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.8e-16 91.3 65 72.3
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 9.9e-15 85.5 106 44.3
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 4.0e-08 63.5 32 87.5
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 6.9e-08 62.8 68 39.7
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 9.0e-08 62.4 42 64.3
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.9e-06 57.4 34 79.4


User provided reference genes

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