Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g039880 Pisum sativum HOM05D001401 ORTHO05D002222 2.2e-35 151.8 76 100.0
Psat2g039720 Pisum sativum HOM05D001401 ORTHO05D002222 2.8e-30 134.8 75 89.3
Psat2g039800 Pisum sativum HOM05D001401 ORTHO05D002222 2.8e-30 134.8 75 89.3
Psat2g039640 Pisum sativum HOM05D001401 ORTHO05D002222 6.2e-30 133.7 75 88.0
Psat7g013000 Pisum sativum HOM05D001401 ORTHO05D002222 1.5e-28 129.0 69 89.9
Medtr1g011540 Medicago truncatula HOM05D001401 ORTHO05D002222 4.1e-26 120.9 75 78.7
Medtr5g041610 Medicago truncatula HOM05D001401 ORTHO05D002222 4.6e-25 117.5 76 78.9
Medtr5g081000 Medicago truncatula HOM05D001401 ORTHO05D002222 1.3e-24 115.9 69 82.6
Medtr5g081030 Medicago truncatula HOM05D001401 ORTHO05D002222 1.5e-23 112.5 76 75.0
Medtr5g080400 Medicago truncatula HOM05D001401 ORTHO05D002222 4.3e-23 110.9 76 73.7
Ca_05879_v3 Cicer arietinum L. HOM05D001401 ORTHO05D002222 5.6e-23 110.5 76 73.7
Psat0s241g0080 Pisum sativum HOM05D001401 ORTHO05D002222 1.2e-22 109.4 76 73.7
Psat0s241g0120 Pisum sativum HOM05D001401 ORTHO05D002222 1.2e-22 109.4 76 73.7
Psat2g118400 Pisum sativum HOM05D001401 ORTHO05D002222 6.2e-22 107.1 70 75.7
Medtr5g080440 Medicago truncatula HOM05D001401 ORTHO05D002222 8.1e-22 106.7 76 72.4
Medtr5g066070 Medicago truncatula HOM05D001401 ORTHO05D002222 1.8e-21 105.5 70 77.1
Medtr5g080900 Medicago truncatula HOM05D001401 ORTHO05D002222 4.0e-21 104.4 69 73.9
Medtr1g090820 Medicago truncatula HOM05D001401 ORTHO05D002222 2.0e-20 102.1 77 70.1
TPR.G25862 Trifolium pratense HOM05D001401 ORTHO05D002222 3.4e-20 101.3 70 72.9
TPR.G4062 Trifolium pratense HOM05D001401 ORTHO05D002222 7.5e-20 100.1 76 67.1
Medtr1g049330 Medicago truncatula HOM05D001401 ORTHO05D002222 1.4e-18 95.9 77 66.2
Ca_05906_v3 Cicer arietinum L. HOM05D001401 ORTHO05D002222 3.5e-17 91.3 70 68.6
TPR.G25864 Trifolium pratense HOM05D001401 ORTHO05D002222 4.6e-17 90.9 70 67.1
Lj5g0024797 Lotus japonicus HOM05D001401 ORTHO05D002222 5.1e-16 87.4 69 68.1
Phvul.007G141900 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 5.6e-15 84.0 68 63.2
Phvul.007G142200 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 5.6e-15 84.0 68 63.2
Phvul.007G142500 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 5.6e-15 84.0 68 63.2
Phvul.007G142600 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 5.6e-15 84.0 68 63.2
Psat6g173720 Pisum sativum HOM05D001401 ORTHO05D002222 5.6e-15 84.0 79 59.5
Nitab4.5_0000107g0220 Nicotiana tabacum HOM05D001401 ORTHO05D002222 9.5e-15 83.2 77 57.1
AL3G21900 Arabidopsis lyrata HOM05D001401 ORTHO05D002222 1.6e-14 82.4 77 57.1
AT3G10520 Arabidopsis thaliana HOM05D001401 ORTHO05D002222 1.6e-14 82.4 77 57.1
Thecc.10G090300 Theobroma cacao HOM05D001401 ORTHO05D002222 1.6e-14 82.4 77 57.1
Medtr7g110180 Medicago truncatula HOM05D001401 ORTHO05D002222 2.8e-14 81.6 70 64.3
Lj5g0002699 Lotus japonicus HOM05D001401 ORTHO05D002222 4.7e-14 80.9 69 63.8
Aqoxy2G01606 Aquilegia oxysepala HOM05D001401 ORTHO05D002222 6.2e-14 80.5 71 60.6
HanXRQChr14g0456181 Helianthus annuus HOM05D001401 ORTHO05D002222 1.1e-13 79.7 77 53.2
Peaxi162Scf00253g00216 Petunia axillaris HOM05D001401 ORTHO05D002222 1.1e-13 79.7 77 55.8
TWI38G2015 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.1e-13 79.7 73 58.9
Carub.0003s0975 Capsella rubella HOM05D001401 ORTHO05D002222 1.4e-13 79.3 75 57.3
Thhalv10021685m.g Eutrema salsugineum HOM05D001401 ORTHO05D002222 1.4e-13 79.3 77 55.8
Glyma.20G191200 Glycine max HOM05D001401 ORTHO05D002222 1.4e-13 79.3 68 60.3
Sc25g0001260 Simmondsia chinensis HOM05D001401 ORTHO05D002222 1.4e-13 79.3 71 56.3
Aqoxy1G03513 Aquilegia oxysepala HOM05D001401 ORTHO05D002222 1.8e-13 79.0 69 60.9
CANSAT56G0068 Cannabis sativa HOM05D001401 ORTHO05D002222 1.8e-13 79.0 77 55.8
Nn2g13892 Nelumbo nucifera HOM05D001401 ORTHO05D002222 1.8e-13 79.0 76 55.3
Phvul.007G142050 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 1.8e-13 79.0 74 55.4
Glyma.10G198900 Glycine max HOM05D001401 ORTHO05D002222 2.4e-13 78.6 74 56.8
MBI19_g42300_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 2.4e-13 78.6 77 55.8
PGSC0003DMG400016915 Solanum tuberosum HOM05D001401 ORTHO05D002222 2.4e-13 78.6 78 55.1
HanXRQChr07g0193521 Helianthus annuus HOM05D001401 ORTHO05D002222 3.1e-13 78.2 77 53.2
Lj5g0004398 Lotus japonicus HOM05D001401 ORTHO05D002222 3.1e-13 78.2 66 63.6
QL08p052964 Quercus lobata HOM05D001401 ORTHO05D002222 3.1e-13 78.2 70 57.1
Sp3g08790 Schrenkiella parvula HOM05D001401 ORTHO05D002222 4.0e-13 77.8 75 57.3
Solyc03g071690.4 Solanum lycopersicum HOM05D001401 ORTHO05D002222 4.0e-13 77.8 77 54.5
Sopen03g019950 Solanum pennellii HOM05D001401 ORTHO05D002222 4.0e-13 77.8 77 54.5
Atru.chr12.935 Acer truncatum HOM05D001401 ORTHO05D002222 5.2e-13 77.4 77 53.2
Actinidia18558 Actinidia chinensis HOM05D001401 ORTHO05D002222 5.2e-13 77.4 77 53.2
Dinv36356 Davidia involucrata HOM05D001401 ORTHO05D002222 6.8e-13 77.0 77 54.5
Gohir.A01G129500 Gossypium hirsutum HOM05D001401 ORTHO05D002222 6.8e-13 77.0 77 51.9
vmacro07207 Vaccinium macrocarpon HOM05D001401 ORTHO05D002222 6.8e-13 77.0 77 53.2
A01p41710 Brassica napus HOM05D001401 ORTHO05D002222 8.9e-13 76.6 75 56.0
BolC1t05389H Brassica oleracea HOM05D001401 ORTHO05D002222 8.9e-13 76.6 75 56.0
BraA01t04246Z Brassica rapa HOM05D001401 ORTHO05D002222 8.9e-13 76.6 75 56.0
PSO339G3798 Papaver somniferum HOM05D001401 ORTHO05D002222 8.9e-13 76.6 75 54.7
PSO801G0777 Papaver somniferum HOM05D001401 ORTHO05D002222 8.9e-13 76.6 75 54.7
SalBow6G5608 Salvia bowleyana HOM05D001401 ORTHO05D002222 8.9e-13 76.6 75 56.0
Sed0007010 Sechium edule HOM05D001401 ORTHO05D002222 8.9e-13 76.6 77 53.2
A05p38660 Brassica napus HOM05D001401 ORTHO05D002222 1.2e-12 76.3 75 56.0
BraA05t22657Z Brassica rapa HOM05D001401 ORTHO05D002222 1.2e-12 76.3 75 56.0
ClCG05G021450 Citrullus lanatus HOM05D001401 ORTHO05D002222 1.2e-12 76.3 77 53.2
Sed0003915 Sechium edule HOM05D001401 ORTHO05D002222 1.2e-12 76.3 77 53.2
THA.LOC104816447 Tarenaya hassleriana HOM05D001401 ORTHO05D002222 1.2e-12 76.3 77 53.2
AUR62028143 Chenopodium quinoa HOM05D001401 ORTHO05D002222 1.5e-12 75.9 66 57.6
Glyma.10G198800 Glycine max HOM05D001401 ORTHO05D002222 1.5e-12 75.9 68 57.4
Glyma.10G199100 Glycine max HOM05D001401 ORTHO05D002222 1.5e-12 75.9 70 55.7
Lsat_1_v5_gn_2_103120 Lactuca sativa HOM05D001401 ORTHO05D002222 1.5e-12 75.9 77 51.9
Oeu005284.1 Olea europaea HOM05D001401 ORTHO05D002222 1.5e-12 75.9 77 51.9
Hund21087 Selenicereus undatus HOM05D001401 ORTHO05D002222 1.5e-12 75.9 77 51.9
CARHR085030 Cardamine hirsuta HOM05D001401 ORTHO05D002222 2.0e-12 75.5 75 54.7
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 2.6e-12 75.1 73 56.2
Gohir.D01G118300 Gossypium hirsutum HOM05D001401 ORTHO05D002222 2.6e-12 75.1 77 51.9
TPR.G37812 Trifolium pratense HOM05D003470 ORTHO05D004157 3.4e-12 74.7 69 58.0
Glyma.10G199000 Glycine max HOM05D001401 ORTHO05D002222 4.4e-12 74.3 68 57.4
Gorai.002G144000 Gossypium raimondii HOM05D001401 ORTHO05D002222 4.4e-12 74.3 77 50.6
Medtr1g090810 Medicago truncatula HOM05D001401 ORTHO05D002222 4.4e-12 74.3 75 53.3
VMungo0720G2894 Vigna mungo HOM05D001401 ORTHO05D002222 4.4e-12 74.3 74 52.7
MELO3C012382.2 Cucumis melo HOM05D001401 ORTHO05D002222 5.8e-12 73.9 77 51.9
ECA238G3780 Erigeron canadensis HOM05D000002 ORTHO05D002222 5.8e-12 73.9 77 50.6
Migut.F01672 Erythranthe guttata HOM05D001401 ORTHO05D002222 5.8e-12 73.9 75 53.3
CSS0013753 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D002222 9.9e-12 73.2 77 53.2
Lj5g0019740 Lotus japonicus HOM05D001401 ORTHO05D002222 9.9e-12 73.2 68 60.3
Psat6g173840 Pisum sativum HOM05D001401 ORTHO05D002222 9.9e-12 73.2 74 52.7
AUR62005920 Chenopodium quinoa HOM05D001401 ORTHO05D002222 1.3e-11 72.8 66 56.1
CsaV3_5G035800 Cucumis sativus L. HOM05D001401 ORTHO05D002222 1.3e-11 72.8 77 51.9
Eucgr.G02733 Eucalyptus grandis HOM05D001401 ORTHO05D002222 1.3e-11 72.8 77 50.6
Ah.13g071220 Amaranthus hybridus HOM05D001401 ORTHO05D002222 1.7e-11 72.4 64 57.8
ECA238G2638 Erigeron canadensis HOM05D001401 ORTHO05D002222 1.7e-11 72.4 77 51.9
BcaC05g29455 Brassica carinata HOM05D001401 ORTHO05D002222 2.2e-11 72.0 75 52.0
C05p57530 Brassica napus HOM05D001401 ORTHO05D002222 2.9e-11 71.6 75 52.0
BolC5t34410H Brassica oleracea HOM05D001401 ORTHO05D002222 2.9e-11 71.6 75 52.0
Lalb_Chr10g0098701 Lupinus albus HOM05D001401 ORTHO05D002222 6.4e-11 70.5 74 52.7
Manes.07G093600 Manihot esculenta HOM05D001401 ORTHO05D002222 6.4e-11 70.5 77 50.6
Cc02_g10510 Coffea canephora HOM05D001401 ORTHO05D002222 3.2e-10 68.2 68 52.9
Sc25g0001270 Simmondsia chinensis HOM05D001401 ORTHO05D002222 7.1e-10 67.0 77 45.5
Nn6g35179 Nelumbo nucifera HOM05D001401 ORTHO05D002222 9.2e-10 66.6 75 53.3
Oeu005279.1 Olea europaea HOM05D001401 ORTHO05D002222 9.2e-10 66.6 68 48.5
Cc02_g10520 Coffea canephora HOM05D001401 ORTHO05D002222 1.2e-09 66.2 77 44.2
Cc02_g30740 Coffea canephora HOM05D001401 ORTHO05D002222 1.2e-09 66.2 68 47.1
Lalb_Chr21g0313081 Lupinus albus HOM05D001401 ORTHO05D002222 1.2e-09 66.2 75 50.7
PGR142G1524 Punica granatum HOM05D001401 ORTHO05D002222 1.2e-09 66.2 75 46.7
Lalb_Chr03g0037031 Lupinus albus HOM05D001401 ORTHO05D002222 3.0e-08 61.6 73 46.6
Glyma.11G121700 Glycine max HOM05D001401 ORTHO05D002222 8.7e-08 60.1 75 45.3
Lalb_Chr17g0341151 Lupinus albus HOM05D001401 ORTHO05D002222 1.9e-07 58.9 74 45.9
MBI19_g09233_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.9e-07 58.9 79 46.8
VMungo1127G2076 Vigna mungo HOM05D001401 ORTHO05D002222 2.5e-07 58.5 68 48.5
Medtr4g068870 Medicago truncatula HOM05D001401 ORTHO05D002222 3.3e-07 58.2 75 46.7
Phvul.011G048600 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 3.3e-07 58.2 68 47.1
arahy.Tifrunner.gnm1.ann1.2999NZ Arachis hypogaea HOM05D001401 ORTHO05D002222 4.3e-07 57.8 77 42.9
arahy.Tifrunner.gnm1.ann1.H8G850 Arachis hypogaea HOM05D001401 ORTHO05D002222 4.3e-07 57.8 77 42.9
Medtr0026s0210 Medicago truncatula HOM05D001401 ORTHO05D002222 4.3e-07 57.8 77 44.2
BcaNung04930 Brassica carinata HOM05D001401 ORTHO05D002222 5.6e-07 57.4 75 46.7
Psat2g039760 Pisum sativum HOM05D001401 ORTHO05D002222 5.6e-07 57.4 34 85.3
Psat2g039840 Pisum sativum HOM05D001401 ORTHO05D002222 5.6e-07 57.4 34 85.3
Hund06212 Selenicereus undatus HOM05D001401 ORTHO05D002222 5.6e-07 57.4 69 46.4
Sc05g0005420 Simmondsia chinensis HOM05D001401 ORTHO05D002222 7.3e-07 57.0 68 45.6
MSTRG.20114 Avicennia marina HOM05D001401 ORTHO05D002222 9.6e-07 56.6 75 40.0
Lalb_Chr01g0002851 Lupinus albus HOM05D001401 ORTHO05D002222 1.2e-06 56.2 68 44.1
CANSAT25G0021 Cannabis sativa HOM05D001401 ORTHO05D002222 1.6e-06 55.8 68 47.1
COL.COLO4_32874 Corchorus olitorius HOM05D001401 ORTHO05D002222 1.6e-06 55.8 77 45.5
Migut.B00280 Erythranthe guttata HOM05D001401 ORTHO05D002222 1.6e-06 55.8 75 41.3
SGA_v2.0_scaffold58G20584 Striga asiatica HOM05D001401 ORTHO05D002222 2.1e-06 55.5 75 40.0
Manes.17G098301 Manihot esculenta HOM05D001401 ORTHO05D002222 2.8e-06 55.1 76 43.4
Oeu034081.1 Olea europaea HOM05D001401 ORTHO05D002222 2.8e-06 55.1 75 40.0
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 3.6e-06 54.7 70 44.3
TPR.G28093 Trifolium pratense HOM05D001401 ORTHO05D002222 3.6e-06 54.7 75 44.0
FAN20G1633 Fragaria x ananassa HOM05D001401 ORTHO05D002222 4.7e-06 54.3 76 39.5
FAN24G1995 Fragaria x ananassa HOM05D001401 ORTHO05D002222 4.7e-06 54.3 76 39.5
RcHm_v2.0_Chr6g0262171 Rosa chinensis HOM05D001401 ORTHO05D002222 4.7e-06 54.3 76 40.8
ATR0733G211 Amborella trichopoda HOM05D001401 ORTHO05D002222 6.2e-06 53.9 75 38.7
FAN27G1882 Fragaria x ananassa HOM05D001401 ORTHO05D002222 6.2e-06 53.9 76 39.5
Lj3g0010114 Lotus japonicus HOM05D001401 ORTHO05D002222 6.2e-06 53.9 70 44.3
Actinidia17830 Actinidia chinensis HOM05D001401 ORTHO05D002222 8.1e-06 53.5 75 42.7
Peaxi162Scf00684g00554 Petunia axillaris HOM05D001401 ORTHO05D002222 8.1e-06 53.5 75 41.3
Rhsim03G0111000 Rhododendron simsii HOM05D001401 ORTHO05D002222 8.1e-06 53.5 52 53.8


User provided reference genes

Program Settings