Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 3.0e-268 927.9 469 100.0
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.0e-223 780.0 466 83.3
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 8.6e-223 776.9 469 83.2
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.1e-198 696.8 477 74.8
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 2.5e-198 695.7 477 75.3
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 9.5e-198 693.7 477 73.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 9.2e-193 677.2 475 71.6
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 6.4e-186 654.4 478 68.6
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.5e-182 642.5 478 67.8
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 9.6e-182 640.6 465 71.4
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.6e-179 632.5 477 67.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 7.6e-179 630.9 477 66.9
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 7.1e-177 624.4 418 73.9
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.1e-168 596.3 465 64.7
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 5.1e-167 591.7 466 63.5
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 8.7e-167 590.9 465 63.7
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 3.1e-164 582.4 461 63.3
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 2.0e-163 579.7 471 61.8
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 3.4e-163 578.9 465 61.3
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.9e-161 573.2 458 61.6
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.6e-160 570.1 465 63.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.1e-160 569.7 468 62.6
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.7e-160 569.3 465 60.0
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 7.9e-160 567.8 464 61.6
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.0e-159 567.4 463 62.2
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 3.3e-158 562.4 465 59.1
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.1e-157 559.7 467 60.8
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 3.1e-156 555.8 462 59.5
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.4e-155 552.4 468 59.8
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 4.5e-155 552.0 470 58.7
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.7e-154 550.1 465 59.8
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.5e-153 545.0 467 59.7
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 9.3e-153 544.3 462 60.2
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.2e-152 543.9 515 56.1
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.3e-151 540.4 466 60.1
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 6.7e-151 538.1 468 58.3
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.9e-150 536.6 468 58.3
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 5.7e-150 535.0 461 56.4
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.7e-149 532.3 463 58.1
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.1e-148 528.9 454 57.3
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.6e-147 526.2 454 57.0
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.0e-146 524.2 467 56.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.3e-146 523.9 465 57.0
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.7e-146 523.5 438 60.0
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 2.2e-146 523.1 468 56.6
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.8e-146 522.3 435 60.5
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.1e-145 520.8 469 57.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.1e-145 520.8 469 57.6
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.9e-145 520.0 469 57.4
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 6.1e-144 515.0 457 55.4
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 2.3e-143 513.1 449 56.3
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 3.0e-143 512.7 468 56.0
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.5e-142 510.4 468 56.0
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 7.4e-142 508.1 455 56.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 2.2e-141 506.5 461 52.1
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.8e-140 503.4 465 53.5
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 4.1e-140 502.3 463 54.9
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 2.2e-138 496.5 461 55.3
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.2e-138 496.5 499 51.5
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 3.8e-138 495.7 464 53.7
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.4e-137 493.8 458 54.1
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 4.2e-137 492.3 466 53.0
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 5.5e-137 491.9 458 52.2
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 7.2e-137 491.5 452 53.1
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.6e-136 490.3 466 51.7
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.6e-136 490.3 458 51.7
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 2.7e-136 489.6 461 54.4
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.8e-135 486.9 463 52.5
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.8e-135 486.9 466 53.4
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 8.8e-135 484.6 448 52.5
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.1e-134 484.2 470 53.0
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.6e-134 483.0 460 52.0
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 2.6e-134 483.0 455 51.9
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 4.4e-134 482.3 459 51.6
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 7.4e-134 481.5 457 52.3
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 7.4e-134 481.5 465 53.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.2e-133 479.9 461 51.6
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.2e-133 479.9 458 51.7
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.8e-133 479.6 457 52.3
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 2.8e-133 479.6 459 54.7
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 4.8e-133 478.8 460 51.5
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 6.3e-133 478.4 460 51.5
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 6.3e-133 478.4 460 51.5
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-131 474.2 460 51.1
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 5.9e-131 471.9 460 54.1
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 7.7e-131 471.5 438 55.3
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 2.2e-130 469.9 464 51.5
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 9.4e-129 464.5 458 49.8
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 2.3e-127 459.9 468 50.4
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 2.6e-126 456.4 423 55.8
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.1e-124 449.5 449 51.2
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 7.0e-124 448.4 458 50.2
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 2.0e-123 446.8 420 53.6
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.0e-123 446.8 464 51.1
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.7e-122 443.7 464 50.9
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.2e-121 439.1 437 51.3
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.7e-117 427.2 458 46.9
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 2.7e-112 409.8 429 52.7
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 2.7e-112 409.8 458 47.4
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 8.8e-111 404.8 457 44.4
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 2.2e-109 400.2 441 46.9
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.7e-107 393.3 463 45.4
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 7.7e-107 391.7 443 45.6
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 6.8e-103 378.6 464 45.7
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 8.3e-93 345.1 435 40.9
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 4.6e-91 339.3 298 56.4
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.2e-88 331.3 285 56.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.4e-86 323.2 355 47.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.4e-86 323.2 355 47.0
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.6e-75 287.7 465 36.3
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 2.7e-75 287.0 490 34.3
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.7e-74 284.3 363 45.5
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 2.6e-70 270.4 522 34.1
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 2.4e-60 237.3 323 42.7
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.7e-58 231.1 523 30.4
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.3e-53 214.9 539 29.3
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.8e-48 196.4 192 52.1
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 9.3e-44 182.2 364 31.0
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.1e-39 168.7 117 67.5
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-37 160.2 127 58.3
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-37 160.2 127 58.3
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 1.1e-36 158.7 162 49.4
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 4.2e-36 156.8 162 48.8
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 9.3e-36 155.6 124 58.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 7.9e-35 152.5 125 58.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 7.4e-33 146.0 241 39.8
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 6.3e-32 142.9 388 27.6
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 6.9e-31 139.4 154 46.8
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.2e-29 134.4 222 37.4
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 7.2e-28 129.4 101 56.4
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 7.9e-27 125.9 444 22.5
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.8e-23 114.8 280 28.6
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.1e-17 95.5 124 40.3
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 5.9e-14 83.2 172 33.1
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.7e-11 73.6 66 51.5
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 4.4e-09 67.0 88 39.8
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 7.5e-09 66.2 88 39.8
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.4e-07 62.0 73 43.8
Zm00001eb301930 Zea mays HOM05D005294 ORTHO05D006720 4.1e-07 60.5 104 38.5


User provided reference genes

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