Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g036160 Pisum sativum HOM05D006983 ORTHO05D008942 2.0e-89 332.4 171 100.0
Medtr5g081740 Medicago truncatula HOM05D006983 ORTHO05D008942 8.6e-72 273.9 168 83.3
Ca_05926_v3 Cicer arietinum L. HOM05D006983 ORTHO05D008942 1.2e-68 263.5 169 75.7
TPR.G40054 Trifolium pratense HOM05D006983 ORTHO05D008942 8.3e-67 257.3 147 86.4
LjContig00357g0002291 Lotus japonicus HOM05D006983 ORTHO05D008942 1.1e-63 246.9 169 72.2
Medtr7g092870 Medicago truncatula HOM05D006983 ORTHO05D008942 5.6e-63 244.6 149 82.6
Glyma.14G062600 Glycine max HOM05D006983 ORTHO05D008942 1.2e-62 243.4 169 72.8
Glyma.02G253900 Glycine max HOM05D006983 ORTHO05D008942 2.8e-62 242.3 171 72.5
arahy.Tifrunner.gnm1.ann1.A3NAV6 Arachis hypogaea HOM05D006983 ORTHO05D008942 1.4e-61 240.0 170 68.2
Phvul.008G227000 Phaseolus vulgaris HOM05D006983 ORTHO05D008942 1.3e-59 233.4 170 71.2
VMungo0647G1533 Vigna mungo HOM05D006983 ORTHO05D008942 7.8e-57 224.2 171 69.0
arahy.Tifrunner.gnm1.ann1.10ZGUJ Arachis hypogaea HOM05D006983 ORTHO05D008942 2.3e-53 212.6 148 67.6
Lalb_Chr10g0104981 Lupinus albus HOM05D006983 ORTHO05D008942 5.2e-53 211.5 170 61.8
Glyma.11G226700 Glycine max HOM05D006983 ORTHO05D008942 5.8e-52 208.0 170 61.2
arahy.Tifrunner.gnm1.ann1.6C4W0P Arachis hypogaea HOM05D006983 ORTHO05D008942 2.9e-51 205.7 170 58.2
TPR.G29801 Trifolium pratense HOM05D006983 ORTHO05D008942 2.9e-51 205.7 170 57.6
Phvul.001G240100 Phaseolus vulgaris HOM05D006983 ORTHO05D008942 1.1e-50 203.8 170 59.4
arahy.Tifrunner.gnm1.ann1.IY3N90 Arachis hypogaea HOM05D006983 ORTHO05D008942 1.9e-50 203.0 170 57.6
VMungo1383G1034 Vigna mungo HOM05D006983 ORTHO05D008942 4.1e-50 201.8 170 58.2
Glyma.18G030500 Glycine max HOM05D006983 ORTHO05D008942 2.7e-49 199.1 171 58.5
Medtr3g070090 Medicago truncatula HOM05D006983 ORTHO05D008942 1.3e-48 196.8 171 56.7
Psat5g127360 Pisum sativum HOM05D006983 ORTHO05D008942 7.3e-47 191.0 170 54.1
Lj6g0016213 Lotus japonicus HOM05D006983 ORTHO05D008942 1.4e-45 186.8 170 54.7
Ca_17141_v3 Cicer arietinum L. HOM05D006983 ORTHO05D008942 6.8e-45 184.5 163 56.4
TAR623G0945 Trochodendron aralioides HOM05D006983 ORTHO05D008942 4.4e-44 181.8 171 52.6
Haze_17176 Corylus avellana HOM05D006983 ORTHO05D008942 7.6e-44 181.0 167 55.7
Atru.chr12.252 Acer truncatum HOM05D006983 ORTHO05D008942 1.3e-43 180.3 169 54.4
Ciclev10033883m.g Citrus clementina HOM05D006983 ORTHO05D008942 2.9e-43 179.1 173 54.9
Dinv20949 Davidia involucrata HOM05D006983 ORTHO05D008942 4.9e-43 178.3 168 51.8
Dinv20994 Davidia involucrata HOM05D006983 ORTHO05D008942 4.9e-43 178.3 168 51.8
Duzib114G0863 Durio zibethinus HOM05D006983 ORTHO05D008942 2.4e-42 176.0 169 52.1
CSS0012253 Camellia sinensis var. sinensis HOM05D006983 ORTHO05D008942 5.4e-42 174.9 164 51.8
Thecc.10G027200 Theobroma cacao HOM05D006983 ORTHO05D008942 2.1e-41 172.9 166 51.2
CiPaw.01G295300 Carya illinoinensis HOM05D006983 ORTHO05D008942 4.6e-41 171.8 168 50.6
vmacro07000 Vaccinium macrocarpon HOM05D006983 ORTHO05D008942 1.0e-40 170.6 171 52.0
Manes.10G018300 Manihot esculenta HOM05D006983 ORTHO05D008942 1.7e-40 169.9 164 50.0
Rhsim03G0139600 Rhododendron simsii HOM05D006983 ORTHO05D008942 2.3e-40 169.5 171 52.0
RcHm_v2.0_Chr1g0369271 Rosa chinensis HOM05D006983 ORTHO05D008942 5.1e-40 168.3 169 49.7
COL.COLO4_25671 Corchorus olitorius HOM05D006983 ORTHO05D008942 6.6e-40 167.9 162 52.5
MBI05_g03441_MAGBIO Magnolia biondii HOM05D006983 ORTHO05D008942 3.3e-39 165.6 172 46.5
Potri.010G193500 Populus trichocarpa HOM05D006983 ORTHO05D008942 3.3e-39 165.6 160 53.1
CSS0014435 Camellia sinensis var. sinensis HOM05D006983 ORTHO05D008942 4.3e-39 165.2 149 51.0
Cpa.g.sc19.223 Carica papaya HOM05D006983 ORTHO05D008942 5.6e-39 164.9 172 47.1
QL08p062549 Quercus lobata HOM05D006983 ORTHO05D008942 7.3e-39 164.5 171 49.7
TWI73G0069 Tripterygium wilfordii HOM05D006983 ORTHO05D008942 9.6e-39 164.1 165 49.7
Duzib106G0752 Durio zibethinus HOM05D006983 ORTHO05D008942 1.3e-38 163.7 167 49.1
GSVIVG01016377001 Vitis vinifera HOM05D006983 ORTHO05D008942 1.6e-38 163.3 172 47.7
Cc02_g06970 Coffea canephora HOM05D006983 ORTHO05D008942 8.1e-38 161.0 170 45.3
Gohir.D10G242900 Gossypium hirsutum HOM05D006983 ORTHO05D008942 1.1e-37 160.6 167 50.3
FAN03G3227 Fragaria x ananassa HOM05D006983 ORTHO05D008942 1.8e-37 159.8 169 49.7
Gorai.011G279300 Gossypium raimondii HOM05D006983 ORTHO05D008942 1.8e-37 159.8 167 49.7
FvH4_7g23940 Fragaria vesca HOM05D006983 ORTHO05D008942 2.4e-37 159.5 169 48.5
FAN01G0283 Fragaria x ananassa HOM05D006983 ORTHO05D008942 2.4e-37 159.5 169 48.5
FAN06G2291 Fragaria x ananassa HOM05D006983 ORTHO05D008942 2.4e-37 159.5 169 48.5
Gohir.A05G346200 Gossypium hirsutum HOM05D006983 ORTHO05D008942 2.4e-37 159.5 159 49.7
Gohir.A10G228900 Gossypium hirsutum HOM05D006983 ORTHO05D008942 4.0e-37 158.7 167 49.7
FAN10G1282 Fragaria x ananassa HOM05D006983 ORTHO05D008942 9.0e-37 157.5 169 49.1
Nitab4.5_0000278g0220 Nicotiana tabacum HOM05D006983 ORTHO05D007189 9.0e-37 157.5 159 51.6
Prupe.2G245400 Prunus persica HOM05D006983 ORTHO05D008942 9.0e-37 157.5 164 47.6
MD01G1146200 Malus domestica HOM05D006983 ORTHO05D008942 2.0e-36 156.4 158 49.4
MELO3C025147.2 Cucumis melo HOM05D006983 ORTHO05D008942 2.6e-36 156.0 163 49.7
MD07G1213100 Malus domestica HOM05D006983 ORTHO05D008942 3.4e-36 155.6 168 48.8
Actinidia29673 Actinidia chinensis HOM05D006983 ORTHO05D008942 5.8e-36 154.8 161 47.2
Gorai.012G075200 Gossypium raimondii HOM05D006983 ORTHO05D008942 7.6e-36 154.5 159 47.8
PGR142G1076 Punica granatum HOM05D006983 ORTHO05D008942 7.6e-36 154.5 167 48.5
Sed0026510 Sechium edule HOM05D006983 ORTHO05D008942 7.6e-36 154.5 160 48.8
Nn2g15918 Nelumbo nucifera HOM05D006983 ORTHO05D008942 1.3e-35 153.7 166 48.8
Sc10g0002160 Simmondsia chinensis HOM05D006983 ORTHO05D008942 1.3e-35 153.7 169 48.5
CsaV3_5G008850 Cucumis sativus L. HOM05D006983 ORTHO05D008942 6.4e-35 151.4 162 48.1
Nitab4.5_0012179g0010 Nicotiana tabacum HOM05D006983 ORTHO05D007189 6.4e-35 151.4 162 49.4
Eucgr.G03025 Eucalyptus grandis HOM05D006983 ORTHO05D008942 1.1e-34 150.6 169 46.7
Gohir.D04G066400 Gossypium hirsutum HOM05D006983 ORTHO05D008942 1.9e-34 149.8 159 47.8
Lsat_1_v5_gn_2_120641 Lactuca sativa HOM05D006983 ORTHO05D008942 3.2e-34 149.1 170 45.9
ECA238G4046 Erigeron canadensis HOM05D006983 ORTHO05D008942 9.3e-34 147.5 160 50.0
HanXRQChr14g0458841 Helianthus annuus HOM05D006983 ORTHO05D008942 1.2e-33 147.1 171 45.6
ClCG07G003900 Citrullus lanatus HOM05D006983 ORTHO05D008942 2.7e-33 146.0 147 49.0
Thhalv10017044m.g Eutrema salsugineum HOM05D006983 ORTHO05D008942 3.5e-33 145.6 172 46.5
ECA233G0306 Erigeron canadensis HOM05D006983 ORTHO05D008942 4.6e-33 145.2 164 46.3
Lj1A949T61 Lonicera japonica HOM05D006983 ORTHO05D008942 4.6e-33 145.2 172 43.6
Sabra10G0149000 Salix brachista HOM05D006983 ORTHO05D008942 7.8e-33 144.4 205 38.5
DCAR_024839 Daucus carota HOM05D006983 ORTHO05D008942 3.9e-32 142.1 164 47.6
Sp4g22230 Schrenkiella parvula HOM05D006983 ORTHO05D008942 3.3e-31 139.0 169 45.0
SalBow5G0486 Salvia bowleyana HOM05D006983 ORTHO05D008942 4.3e-31 138.7 157 42.0
CARHR134840 Cardamine hirsuta HOM05D006983 ORTHO05D008942 1.3e-30 137.1 160 45.0
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 1.6e-30 136.7 160 42.5
Hma1.2p1_0710F.1_g207380 Hydrangea macrophylla HOM05D006983 ORTHO05D008942 1.6e-30 136.7 169 40.2
Migut.F00708 Erythranthe guttata HOM05D006983 ORTHO05D008942 3.6e-30 135.6 163 39.9
BcaB02g09071 Brassica carinata HOM05D006983 ORTHO05D008942 1.8e-29 133.3 166 44.0
Carub.0004s2205 Capsella rubella HOM05D006983 ORTHO05D008942 5.3e-29 131.7 157 42.0
PSO339G3533 Papaver somniferum HOM05D006983 ORTHO05D008942 5.3e-29 131.7 162 46.3
HanXRQChr12g0369331 Helianthus annuus HOM05D006983 ORTHO05D008942 6.9e-29 131.3 167 45.5
AL4G37500 Arabidopsis lyrata HOM05D006983 ORTHO05D008942 1.2e-28 130.6 156 41.7
AT2G39920 Arabidopsis thaliana HOM05D006983 ORTHO05D008942 1.2e-28 130.6 156 44.2
Aa31LG5G19700 Aethionema arabicum HOM05D006983 ORTHO05D008942 2.6e-28 129.4 167 37.1
BraA05t19618Z Brassica rapa HOM05D006983 ORTHO05D008942 2.6e-28 129.4 161 44.7
C04p07590 Brassica napus HOM05D006983 ORTHO05D008942 4.5e-28 128.6 161 44.1
BolC4t22375H Brassica oleracea HOM05D006983 ORTHO05D008942 1.3e-27 127.1 160 41.9
BcaC02g12125 Brassica carinata HOM05D006983 ORTHO05D008942 2.2e-27 126.3 161 43.5
A05p06500 Brassica napus HOM05D006983 ORTHO05D008942 4.9e-27 125.2 161 44.1
ATR0618G335 Amborella trichopoda HOM05D006983 ORTHO05D008942 7.1e-26 121.3 156 41.0
PSO384G2074 Papaver somniferum HOM05D006983 ORTHO05D008942 9.3e-26 120.9 162 44.4
THA.LOC104810069 Tarenaya hassleriana HOM05D006983 ORTHO05D008942 1.0e-24 117.5 159 42.8
HPP92_015339 Vanilla planifolia HOM05D006983 ORTHO05D008942 1.0e-24 117.5 162 39.5
HanXRQChr07g0202311 Helianthus annuus HOM05D006983 ORTHO05D008942 4.3e-23 112.1 142 41.5
Nn2g13598 Nelumbo nucifera HOM05D006983 ORTHO05D008942 7.1e-18 94.7 92 46.7
Dinv20946 Davidia involucrata HOM05D006983 ORTHO05D008942 2.0e-12 76.6 99 48.5
Dinv20997 Davidia involucrata HOM05D006983 ORTHO05D008942 2.0e-12 76.6 99 48.5
arahy.Tifrunner.gnm1.ann1.8MP8X0 Arachis hypogaea HOM05D006983 ORTHO05D038939 2.5e-10 69.7 59 66.1
Mapoly0028s0005 Marchantia polymorpha HOM05D000647 ORTHO05D000485 5.5e-10 68.6 157 29.9
Pp3c26_14760 Physcomitrium patens HOM05D000647 ORTHO05D000485 7.1e-10 68.2 124 29.0
Oeu006657.1 Olea europaea HOM05D006983 ORTHO05D008942 1.0e-08 64.3 69 52.2
Pp3c4_27860 Physcomitrium patens HOM05D000647 ORTHO05D000485 1.0e-08 64.3 124 26.6
BcaB06g26858 Brassica carinata HOM05D006983 ORTHO05D008942 6.7e-08 61.6 88 37.5
Pp3c5_13290 Physcomitrium patens HOM05D000647 ORTHO05D000485 4.3e-07 58.9 162 25.9
Pp3c16_1470 Physcomitrium patens HOM05D000647 ORTHO05D000485 8.2e-06 54.7 126 26.2


User provided reference genes

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