Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 7.2e-256 886.7 440 100.0
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 7.8e-202 707.2 452 78.1
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.1e-195 686.8 444 77.3
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 4.6e-170 601.7 438 67.8
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.3e-168 595.5 439 65.8
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.1e-166 590.5 441 67.8
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 4.0e-166 588.6 431 66.1
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 7.9e-162 574.3 457 63.0
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.0e-161 572.4 450 63.8
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.5e-157 560.1 453 63.8
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.0e-157 559.7 456 63.6
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.5e-155 552.7 454 63.0
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.5e-155 552.7 455 62.4
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.2e-151 539.7 451 62.1
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.8e-150 536.6 455 60.7
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.5e-147 526.2 453 59.6
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 5.5e-147 525.0 455 60.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 7.2e-147 524.6 453 58.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 4.7e-138 495.4 462 55.4
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.7e-138 495.4 469 55.0
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.0e-137 494.2 452 58.8
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.3e-137 493.0 465 54.4
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 3.9e-137 492.3 463 54.4
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.5e-136 490.3 464 54.5
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.7e-135 486.9 447 57.3
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.7e-135 486.9 463 53.1
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 6.3e-135 485.0 471 53.1
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 2.4e-134 483.0 469 54.2
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.1e-134 482.6 466 53.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.0e-134 481.5 464 53.0
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.6e-133 479.6 464 53.2
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.9e-133 478.4 470 52.1
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.9e-133 478.4 469 52.5
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.0e-132 477.6 464 53.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.0e-132 477.6 464 51.5
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.0e-132 477.6 469 51.6
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.3e-132 477.2 462 54.3
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.7e-132 476.9 464 52.6
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.9e-132 476.1 469 53.1
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 3.8e-132 475.7 462 53.5
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.5e-132 474.9 467 53.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 8.5e-132 474.6 467 54.0
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-131 474.2 465 54.6
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.5e-131 473.8 463 51.2
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.9e-131 473.4 463 50.8
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 5.5e-131 471.9 470 51.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 5.5e-131 471.9 469 50.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 9.4e-131 471.1 461 53.4
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 2.1e-130 469.9 468 52.6
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.7e-130 469.5 465 53.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.6e-130 469.2 461 53.1
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.6e-130 469.2 461 53.1
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.6e-130 469.2 468 51.9
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 4.7e-130 468.8 467 52.0
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 6.1e-130 468.4 445 52.8
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.4e-129 467.2 467 52.2
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.3e-129 466.5 462 53.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-128 464.2 454 50.7
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 3.4e-128 462.6 449 53.7
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 4.4e-128 462.2 472 49.6
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 4.4e-128 462.2 444 52.9
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.7e-128 461.8 454 50.7
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 7.5e-128 461.5 461 52.1
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.8e-126 456.8 471 49.3
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 5.3e-126 455.3 440 51.4
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 7.0e-126 454.9 466 48.9
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 9.1e-126 454.5 446 51.3
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-125 454.1 440 51.4
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 2.0e-125 453.4 440 50.9
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 5.9e-125 451.8 468 48.9
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.9e-125 451.8 467 49.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 7.7e-125 451.4 482 49.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.2e-124 449.9 467 51.8
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.0e-124 448.7 446 51.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.1e-123 447.6 458 50.9
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-123 447.2 440 50.0
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.2e-123 446.0 437 51.9
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-123 444.9 440 50.2
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-123 444.9 440 50.2
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.2e-122 444.1 447 51.2
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.6e-122 443.7 461 51.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.0e-121 441.0 455 49.9
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.0e-121 441.0 466 49.1
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.8e-121 440.3 460 49.3
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.3e-121 439.9 448 50.4
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 3.0e-121 439.5 437 51.5
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.0e-121 439.1 447 50.6
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 6.8e-121 438.3 437 51.3
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 6.8e-121 438.3 437 51.5
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 8.8e-121 438.0 469 50.3
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 8.8e-121 438.0 466 49.8
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.0e-120 436.8 466 48.7
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 3.4e-120 436.0 439 51.5
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-120 436.0 437 51.7
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.4e-120 436.0 437 51.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 5.7e-120 435.3 447 49.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.5e-120 434.9 451 50.6
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 7.5e-120 434.9 473 49.7
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 9.8e-120 434.5 437 51.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.3e-119 434.1 474 47.3
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 2.2e-119 433.3 459 47.9
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.7e-119 432.6 458 49.6
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 4.1e-118 429.1 462 47.2
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 4.1e-118 429.1 437 50.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.2e-117 427.6 463 48.8
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.6e-117 427.2 453 48.6
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.0e-117 426.8 445 50.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.7e-117 426.4 457 49.5
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.5e-117 426.0 444 49.3
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.9e-117 425.2 432 50.0
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 7.7e-117 424.9 446 48.7
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.7e-116 423.7 446 49.6
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 3.8e-116 422.5 437 49.9
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.8e-116 422.5 444 49.3
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.1e-115 421.0 474 47.7
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.1e-115 421.0 456 51.5
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.1e-115 421.0 471 46.7
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.1e-115 421.0 455 47.5
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.5e-115 420.6 444 49.1
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.5e-115 419.9 428 50.7
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-115 419.5 437 49.7
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 5.5e-115 418.7 458 46.7
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.1e-114 416.8 454 48.5
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.7e-114 415.6 433 49.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 8.0e-114 414.8 459 47.7
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-113 414.1 445 48.8
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.3e-113 413.3 423 48.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 5.2e-113 412.1 445 48.5
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 6.8e-113 411.8 460 47.8
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-112 409.5 445 48.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.4e-112 409.5 445 48.1
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-110 404.1 469 46.1
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.1e-110 402.5 463 46.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.1e-107 394.4 475 44.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.9e-103 379.0 464 45.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-101 374.0 465 43.4
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.0e-100 371.3 470 41.3
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 7.5e-96 355.1 380 45.8
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.9e-94 350.5 405 46.7
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 7.3e-91 338.6 454 41.6
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.1e-89 334.7 420 43.8
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 5.2e-89 332.4 444 42.3
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 6.4e-87 325.5 439 41.5
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 7.8e-85 318.5 312 52.2
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 7.8e-85 318.5 312 52.2
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.7e-84 317.4 418 42.1
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.0e-80 303.9 429 39.2
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 5.8e-80 302.4 446 40.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 7.6e-80 302.0 332 47.9
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.3e-76 290.4 429 36.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.6e-75 285.0 463 35.4
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-74 284.6 436 36.7
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.2e-74 282.3 429 35.2
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-72 277.3 418 36.4
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 6.7e-60 235.7 201 60.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.1e-57 226.9 324 38.0
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-54 217.6 185 56.8
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-54 217.6 185 56.8
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.0e-53 212.6 334 40.1
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-46 189.1 161 59.0
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-45 188.3 210 44.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 7.9e-45 185.7 204 49.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.0e-39 166.4 162 50.0
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 3.0e-36 157.1 139 57.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.2e-22 110.5 322 31.1
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.7e-18 98.2 115 45.2
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 4.8e-18 96.7 283 27.2
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 6.3e-18 96.3 168 39.9
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 4.5e-16 90.1 80 52.5
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.5e-14 85.1 82 51.2


User provided reference genes

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