Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g033360 Pisum sativum HOM05D000141 ORTHO05D004489 8.9e-69 263.5 131 100.0
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 1.3e-59 233.0 122 95.9
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 4.1e-50 201.4 122 82.8
TPR.G33741 Trifolium pratense HOM05D000141 ORTHO05D004489 5.4e-50 201.1 122 82.0
Ca_25026_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 3.5e-49 198.4 117 84.6
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 7.3e-47 190.7 122 77.9
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 1.2e-46 189.9 122 77.0
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 2.1e-46 189.1 122 79.5
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 4.7e-46 188.0 122 76.2
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 4.0e-45 184.9 123 76.4
Psat6g138520 Pisum sativum HOM05D000141 ORTHO05D004489 6.4e-43 177.6 122 77.9
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 8.4e-43 177.2 123 74.0
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 8.4e-43 177.2 123 74.0
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 6.0e-41 171.0 122 72.1
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 7.8e-41 170.6 122 72.1
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 7.8e-41 170.6 123 72.4
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 8.7e-40 167.2 113 73.5
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 1.1e-39 166.8 113 73.5
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 2.5e-39 165.6 122 68.9
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 2.5e-39 165.6 122 68.9
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 3.3e-39 165.2 107 74.8
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 4.3e-39 164.9 122 68.9
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 7.3e-39 164.1 113 72.6
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 9.6e-39 163.7 122 69.7
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 9.6e-39 163.7 122 68.9
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 1.3e-38 163.3 107 73.8
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 1.6e-38 162.9 111 73.0
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 2.1e-38 162.5 123 69.1
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 2.8e-38 162.2 122 68.9
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 2.8e-38 162.2 122 69.7
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 4.8e-38 161.4 122 66.4
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 4.8e-38 161.4 122 66.4
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 6.2e-38 161.0 122 68.9
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 6.2e-38 161.0 122 68.9
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 6.2e-38 161.0 122 68.9
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 6.2e-38 161.0 122 68.9
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 8.1e-38 160.6 119 72.3
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 8.1e-38 160.6 122 71.3
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 8.1e-38 160.6 122 68.0
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 1.4e-37 159.8 122 67.2
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 1.4e-37 159.8 114 71.1
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 1.8e-37 159.5 122 65.6
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 2.4e-37 159.1 122 67.2
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 4.0e-37 158.3 104 75.0
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 4.0e-37 158.3 122 69.7
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 1.2e-36 156.8 122 68.9
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 1.2e-36 156.8 122 63.9
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 1.5e-36 156.4 123 66.7
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 2.0e-36 156.0 122 66.4
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 2.0e-36 156.0 122 69.7
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 4.4e-36 154.8 123 66.7
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 5.8e-36 154.5 113 71.7
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 9.9e-36 153.7 113 68.1
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 1.3e-35 153.3 122 66.4
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 1.3e-35 153.3 125 65.6
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 1.7e-35 152.9 113 68.1
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 1.7e-35 152.9 113 68.1
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 1.7e-35 152.9 113 71.7
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 2.9e-35 152.1 113 67.3
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 1.4e-34 149.8 122 63.9
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 2.4e-34 149.1 110 70.9
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 3.2e-34 148.7 121 66.9
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 3.2e-34 148.7 121 66.9
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 4.2e-34 148.3 122 63.9
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 7.1e-34 147.5 122 62.3
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 2.1e-33 146.0 113 69.9
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 4.6e-33 144.8 113 64.6
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 4.6e-33 144.8 113 65.5
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 4.6e-33 144.8 113 66.4
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 6.0e-33 144.4 125 64.8
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 6.0e-33 144.4 113 66.4
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 1.0e-32 143.7 122 61.5
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.7e-32 142.9 120 64.2
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 2.3e-32 142.5 113 65.5
Nitab4.5_0017516g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 2.3e-32 142.5 111 65.8
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 3.0e-32 142.1 113 64.6
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 5.1e-32 141.4 112 65.2
Nitab4.5_0028853g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 5.1e-32 141.4 111 64.9
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 8.7e-32 140.6 111 65.8
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 1.9e-31 139.4 113 64.6
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 2.5e-31 139.0 118 61.9
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 2.5e-31 139.0 113 64.6
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 4.3e-31 138.3 113 66.4
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 4.3e-31 138.3 111 64.9
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 4.3e-31 138.3 111 64.9
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 1.3e-30 136.7 94 73.4
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 1.3e-30 136.7 123 62.6
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 2.1e-30 136.0 122 59.8
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 2.8e-30 135.6 112 65.2
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 2.8e-30 135.6 91 75.8
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 3.6e-30 135.2 123 61.0
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 1.8e-29 132.9 113 61.1
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 3.1e-29 132.1 105 67.6
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 5.3e-29 131.3 122 58.2
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 6.9e-29 131.0 117 57.3
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 1.5e-28 129.8 109 64.2
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 1.5e-28 129.8 109 64.2
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 1.5e-28 129.8 123 61.0
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 4.5e-28 128.3 123 61.0
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 7.6e-28 127.5 124 55.6
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 1.1e-26 123.6 122 58.2
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 1.2e-25 120.2 74 81.1
Hund19673 Selenicereus undatus HOM05D000141 ORTHO05D004489 3.9e-24 115.2 123 53.7
COL.COLO4_22572 Corchorus olitorius HOM05D000141 ORTHO05D004489 2.4e-21 105.9 125 53.6
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 5.3e-21 104.8 104 52.9
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 6.9e-21 104.4 125 49.6
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 6.9e-21 104.4 104 53.8
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 6.9e-21 104.4 63 79.4
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 9.0e-21 104.0 85 62.4
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 9.0e-21 104.0 86 61.6
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 9.0e-21 104.0 86 61.6
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 1.0e-19 100.5 86 59.3
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 2.7e-17 92.4 89 56.2
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 2.7e-17 92.4 121 41.3
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 3.5e-17 92.0 144 39.6
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 3.5e-17 92.0 113 52.2
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 7.9e-17 90.9 121 40.5
Pp3c15_3730 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.0e-16 90.5 95 47.4
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 1.8e-16 89.7 93 54.8
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 2.3e-16 89.4 92 54.3
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 3.0e-16 89.0 64 67.2
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 6.7e-16 87.8 111 49.5
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 8.7e-16 87.4 152 38.8
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 1.5e-15 86.7 111 48.6
Pp3c9_4530 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.5e-15 86.7 95 45.3
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 1.9e-15 86.3 93 53.8
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 2.5e-15 85.9 111 48.6
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 4.8e-14 81.6 84 56.0
SHI32494 Sapria himalayana HOM05D000141 ORTHO05D004489 6.3e-14 81.3 76 55.3
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 1.2e-12 77.0 45 80.0
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 1.0e-11 73.9 58 60.3
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 1.7e-11 73.2 74 47.3
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 6.5e-11 71.2 39 82.1
arahy.Tifrunner.gnm1.ann1.A1QYXG Arachis hypogaea HOM05D000846 ORTHO05D001340 3.2e-10 68.9 57 61.4
HPP92_022037 Vanilla planifolia HOM05D000141 ORTHO05D004489 4.8e-06 55.1 40 62.5


User provided reference genes

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