Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 0.0e+00 1085.5 561 100.0
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.0e-295 1018.5 561 93.2
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 4.2e-293 1010.7 562 92.3
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.5e-277 959.1 562 87.2
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.2e-276 956.1 562 87.4
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.0e-271 938.7 562 86.5
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.7e-271 938.3 562 87.0
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 9.1e-264 913.3 562 84.3
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.2e-255 886.3 565 81.4
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 5.0e-254 880.9 533 85.2
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.1e-252 875.5 583 79.2
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 3.0e-222 775.4 566 71.0
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 3.9e-222 775.0 570 71.2
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.1e-221 773.5 569 69.9
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.9e-221 772.7 569 70.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 6.9e-219 764.2 569 69.9
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 9.0e-219 763.8 566 68.7
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.6e-218 762.3 569 69.8
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 9.9e-218 760.4 570 67.9
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 2.2e-217 759.2 569 68.7
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.1e-216 756.9 566 70.0
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.9e-216 756.1 571 68.0
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 4.2e-216 755.0 586 66.7
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.9e-214 748.4 566 69.4
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 5.1e-214 748.0 569 67.8
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.1e-213 746.9 570 68.6
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.5e-213 746.5 569 70.3
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.8e-212 741.5 559 69.9
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 9.0e-211 737.3 569 68.2
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.5e-210 736.5 560 69.3
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 9.9e-210 733.8 565 68.1
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.2e-209 732.6 570 65.6
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.9e-209 732.3 583 66.6
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.4e-209 731.1 561 68.3
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.4e-209 731.1 569 67.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 6.0e-207 724.5 569 66.8
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 3.0e-206 722.2 566 65.5
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 5.6e-205 718.0 560 67.9
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.4e-203 712.6 573 66.3
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.4e-203 712.6 569 66.3
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.6e-202 709.1 570 63.7
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 2.6e-202 709.1 570 65.3
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 5.8e-202 708.0 565 66.5
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.0e-201 707.2 569 64.0
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.3e-201 706.8 568 63.7
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.9e-200 703.0 565 66.4
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.9e-200 703.0 567 64.4
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.2e-200 702.2 610 60.5
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 5.5e-200 701.4 567 64.0
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 4.6e-199 698.4 567 64.2
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 6.0e-199 698.0 569 62.4
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 7.9e-199 697.6 515 69.9
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 1.3e-198 696.8 567 64.4
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.3e-198 696.8 564 66.1
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 3.9e-198 695.3 567 64.4
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.5e-197 693.3 518 70.3
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.5e-197 693.3 566 64.8
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 3.3e-197 692.2 542 65.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 3.7e-196 688.7 380 92.4
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 4.8e-196 688.3 568 63.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 2.4e-195 686.0 565 64.1
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.2e-194 683.7 568 63.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.5e-194 683.3 565 63.2
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.5e-194 683.3 565 62.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.0e-194 682.9 567 63.3
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 4.5e-194 681.8 565 63.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.7e-193 679.9 569 63.1
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.2e-193 679.5 518 68.7
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.2e-193 679.5 577 62.6
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 2.9e-193 679.1 569 62.4
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 3.8e-193 678.7 564 62.1
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 5.5e-192 674.9 573 61.8
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.6e-191 673.3 587 61.2
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 4.6e-191 671.8 582 61.2
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 6.1e-191 671.4 588 61.1
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.0e-190 670.6 546 64.5
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 3.9e-190 668.7 569 61.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.9e-189 666.4 582 60.7
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.9e-189 666.4 566 62.0
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.2e-188 662.9 611 57.9
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.4e-187 659.4 567 59.6
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 2.4e-187 659.4 531 64.6
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 2.0e-186 656.4 572 59.4
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 3.2e-184 649.0 571 60.9
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 3.2e-184 649.0 589 58.4
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 4.3e-181 638.6 571 60.1
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.7e-181 638.3 530 65.3
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.4e-181 637.9 461 71.4
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.0e-178 629.8 575 58.8
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.0e-177 627.5 569 58.0
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 2.7e-175 619.4 546 60.6
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 8.8e-174 614.4 569 57.5
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.5e-173 613.6 569 56.6
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.5e-173 613.6 332 94.0
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.7e-172 610.1 569 58.3
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.2e-172 609.8 571 55.5
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.4e-171 606.3 532 61.1
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 5.3e-171 605.1 533 61.2
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 3.6e-167 592.4 564 54.4
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 4.8e-164 582.0 535 57.2
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.0e-161 574.3 325 91.4
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.7e-161 573.5 537 59.6
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 3.8e-161 572.4 539 59.2
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 6.5e-161 571.6 563 55.4
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.8e-157 557.8 562 52.1
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.9e-153 546.2 524 54.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.5e-152 543.1 284 97.9
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 3.2e-152 542.7 512 58.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 4.4e-149 532.3 536 51.7
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.4e-147 526.6 564 52.5
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 7.8e-138 495.0 577 45.2
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 8.0e-135 485.0 437 56.5
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.5e-128 464.2 569 48.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 7.3e-120 435.3 229 97.4
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.9e-112 410.6 293 71.3
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.1e-110 403.3 290 75.9
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 8.7e-105 385.2 267 78.3
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.1e-104 384.8 385 55.1
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 8.7e-97 358.6 311 60.5
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.3e-96 356.7 550 36.9
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 5.8e-93 345.9 288 62.5
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 2.5e-80 303.9 523 33.8
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 2.3e-73 280.8 177 77.4
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.5e-69 268.1 535 30.8
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 6.1e-66 256.1 204 65.2
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 2.8e-63 247.3 139 91.4
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 5.3e-62 243.0 215 59.5
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 2.0e-56 224.6 636 27.5
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 3.6e-50 203.8 371 38.8
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 7.5e-48 196.1 278 45.7
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 4.0e-33 147.1 95 81.1
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 7.5e-32 142.9 83 89.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 8.3e-31 139.4 88 80.7
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.6e-29 135.2 159 49.1
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.7e-29 134.4 152 42.8
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 5.6e-27 126.7 106 65.1
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.9e-20 104.0 148 39.9
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.2e-18 99.0 76 65.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.3e-17 94.7 160 40.6
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.2e-14 84.3 68 61.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-11 75.9 82 42.7
Ca_06068_v3 Cicer arietinum L. HOM05D008273 ORTHO05D000110 3.3e-11 74.3 37 91.9
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.6e-10 70.9 70 55.7
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.6e-10 70.9 70 55.7
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 5.2e-09 67.0 46 73.9
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 3.4e-08 64.3 77 48.1
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 6.4e-07 60.1 35 85.7


User provided reference genes

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