Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 2.6e-89 332.0 167 100.0
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 1.4e-82 309.7 163 95.1
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 2.7e-78 295.4 167 89.8
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 3.3e-76 288.5 167 87.4
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 1.6e-75 286.2 167 89.2
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 3.6e-75 285.0 159 92.5
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 7.3e-68 260.8 159 81.1
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 1.4e-66 256.5 165 78.2
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 5.3e-66 254.6 159 79.9
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 9.9e-65 250.4 165 77.6
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 1.4e-63 246.5 165 74.5
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 2.4e-63 245.7 148 80.4
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.6e-62 243.0 159 78.0
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 6.0e-62 241.1 159 75.5
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 6.9e-58 227.6 145 75.2
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 6.7e-53 211.1 159 64.8
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 8.7e-53 210.7 158 65.2
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 1.5e-52 209.9 142 70.4
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 1.5e-52 209.9 159 69.8
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 4.3e-52 208.4 164 64.0
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 5.6e-52 208.0 148 66.2
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 7.4e-52 207.6 168 63.1
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 1.6e-51 206.5 164 63.4
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 4.8e-51 204.9 160 61.9
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 6.2e-51 204.5 149 67.1
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 3.1e-50 202.2 143 69.2
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 4.0e-50 201.8 142 67.6
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 5.3e-50 201.4 150 63.3
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 6.9e-50 201.1 161 61.5
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 1.2e-49 200.3 156 60.9
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 1.5e-49 199.9 157 68.2
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 2.6e-49 199.1 149 63.8
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.6e-49 199.1 159 65.4
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 5.8e-49 198.0 160 62.5
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 5.8e-49 198.0 159 64.8
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 7.6e-49 197.6 159 61.0
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 7.6e-49 197.6 168 60.1
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.0e-48 197.2 152 62.5
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.4e-47 193.4 144 66.0
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 1.9e-47 193.0 136 69.1
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 1.9e-47 193.0 157 62.4
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 3.2e-47 192.2 159 64.8
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 4.2e-47 191.8 165 56.4
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 5.5e-47 191.4 150 61.3
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 5.5e-47 191.4 143 62.9
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 9.3e-47 190.7 144 61.8
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 9.3e-47 190.7 143 62.9
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 9.3e-47 190.7 165 56.4
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 1.2e-46 190.3 159 61.6
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 2.7e-46 189.1 159 61.0
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.0e-45 187.2 147 61.9
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 1.0e-45 187.2 148 60.8
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 1.3e-45 186.8 159 59.1
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.3e-45 186.0 144 62.5
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 5.1e-45 184.9 138 63.8
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 8.7e-45 184.1 159 61.0
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 1.1e-44 183.7 149 60.4
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 1.5e-44 183.3 147 60.5
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 1.5e-44 183.3 149 61.1
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.5e-44 183.3 128 69.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.9e-44 183.0 144 61.8
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 2.5e-44 182.6 145 61.4
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.3e-44 181.8 144 61.1
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 4.3e-44 181.8 144 60.4
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 1.3e-43 180.3 144 61.1
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 1.6e-43 179.9 144 60.4
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 1.6e-43 179.9 158 56.3
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 2.2e-43 179.5 139 60.4
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 2.2e-43 179.5 160 56.9
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 2.8e-43 179.1 140 60.7
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 3.7e-43 178.7 144 59.7
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 3.7e-43 178.7 144 61.8
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 4.8e-43 178.3 159 56.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 6.3e-43 177.9 146 59.6
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 6.3e-43 177.9 128 68.0
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 1.1e-42 177.2 151 57.0
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 1.8e-42 176.4 157 56.1
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 1.8e-42 176.4 159 55.3
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 3.1e-42 175.6 159 57.2
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 4.1e-42 175.3 146 57.5
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 4.1e-42 175.3 157 56.1
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 5.3e-42 174.9 160 55.0
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 9.0e-42 174.1 159 56.0
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 1.2e-41 173.7 133 60.2
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.5e-41 173.3 159 56.0
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 3.4e-41 172.2 143 57.3
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 3.4e-41 172.2 161 57.1
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 4.5e-41 171.8 157 57.3
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.0e-40 170.6 144 59.0
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 1.3e-40 170.2 147 56.5
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 2.9e-40 169.1 163 51.5
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 3.8e-40 168.7 136 61.0
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 3.8e-40 168.7 161 53.4
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.1e-39 167.2 159 54.7
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 1.1e-39 167.2 146 56.8
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 1.9e-39 166.4 147 54.4
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 4.2e-39 165.2 132 55.3
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 7.2e-39 164.5 144 52.8
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 7.2e-39 164.5 145 55.9
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 1.6e-38 163.3 164 50.0
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 2.2e-35 152.9 136 53.7
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 3.7e-35 152.1 132 56.1
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 4.5e-33 145.2 126 60.3
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 5.9e-33 144.8 108 62.0
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 1.0e-32 144.1 126 61.1
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 1.7e-32 143.3 132 58.3
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 3.8e-32 142.1 141 54.6
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.4e-31 140.2 103 67.0
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.4e-31 140.2 152 48.7
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 2.1e-30 136.3 114 57.9
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 2.1e-30 136.3 164 43.3
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 3.6e-30 135.6 128 50.8
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 1.8e-29 133.3 130 46.9
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 9.7e-28 127.5 131 47.3
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 4.1e-26 122.1 144 44.4
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 6.9e-26 121.3 132 47.0
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 1.7e-24 116.7 105 55.2
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 2.2e-24 116.3 143 44.1
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 2.1e-22 109.8 93 63.4
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 8.8e-21 104.4 76 65.8
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 2.8e-19 99.4 76 64.5
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 2.4e-18 96.3 104 47.1
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 5.3e-18 95.1 130 41.5
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 7.2e-15 84.7 64 59.4
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 6.1e-14 81.6 68 55.9
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 1.0e-13 80.9 130 34.6
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 5.2e-13 78.6 71 50.7
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 8.8e-13 77.8 93 54.8
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 2.2e-11 73.2 76 47.4
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 3.1e-10 69.3 49 61.2
Medtr5g087980 Medicago truncatula HOM05D000678 ORTHO05D002523 1.6e-09 67.0 81 48.1
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 2.2e-08 63.2 41 63.4


User provided reference genes

Program Settings