Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 2.9e-211 738.4 401 100.0
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 2.3e-131 473.0 352 69.6
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 2.3e-131 473.0 324 73.8
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 6.6e-131 471.5 331 72.5
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.7e-118 430.3 325 66.8
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.1e-112 411.0 325 67.7
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 2.4e-109 399.8 320 63.1
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.2e-108 397.5 319 61.8
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.9e-106 390.2 320 61.6
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 9.6e-106 387.9 318 61.3
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-100 370.9 318 59.1
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-100 370.9 318 59.1
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.1e-100 370.2 318 59.1
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 2.4e-93 346.7 316 54.4
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 2.1e-92 343.6 316 54.4
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 3.9e-91 339.3 316 54.7
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 3.9e-91 339.3 326 53.1
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 5.1e-91 339.0 321 55.1
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.3e-89 334.3 314 53.2
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.1e-88 331.3 319 53.3
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.8e-88 330.5 316 54.4
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.4e-88 330.1 319 53.0
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 4.5e-87 325.9 319 51.4
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 1.3e-86 324.3 319 50.5
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 4.9e-86 322.4 315 51.7
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.4e-85 320.1 318 51.3
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 4.2e-85 319.3 318 51.3
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 5.5e-85 318.9 315 50.5
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 2.1e-84 317.0 338 51.5
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 6.0e-84 315.5 319 52.7
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 3.0e-83 313.2 313 50.2
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 5.1e-83 312.4 310 51.3
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 5.1e-83 312.4 310 51.3
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 1.1e-82 311.2 310 51.3
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 5.6e-82 308.9 313 49.5
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 9.6e-82 308.1 319 50.5
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 9.6e-82 308.1 315 48.9
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 8.1e-81 305.1 322 47.2
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 1.1e-80 304.7 312 48.7
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.4e-80 303.5 313 48.9
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 4.0e-80 302.8 316 48.1
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.9e-80 302.0 313 48.6
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 1.5e-79 300.8 314 48.4
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.0e-79 300.4 319 47.0
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 2.9e-78 296.6 316 49.4
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 8.4e-78 295.0 313 46.6
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.5e-77 293.5 313 46.3
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 4.2e-77 292.7 313 49.5
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.6e-76 290.8 321 47.7
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 1.6e-76 290.8 314 48.1
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 2.1e-76 290.4 313 48.9
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 1.8e-75 287.3 318 46.9
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 3.0e-75 286.6 318 47.5
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 1.1e-74 284.6 304 47.0
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 5.7e-74 282.3 314 45.9
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.3e-73 281.2 328 46.0
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 6.3e-73 278.9 315 45.4
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 8.2e-73 278.5 266 51.5
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 8.2e-73 278.5 313 46.6
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 1.1e-72 278.1 274 51.8
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 1.8e-72 277.3 324 46.3
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.9e-69 267.3 264 50.4
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 7.2e-69 265.4 316 45.3
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 9.3e-69 265.0 314 43.6
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 1.6e-68 264.2 313 43.8
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.3e-67 260.4 318 44.7
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 2.3e-67 260.4 264 49.2
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.9e-66 257.3 276 49.3
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.9e-66 257.3 316 44.0
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 2.2e-65 253.8 320 43.8
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 4.5e-63 246.1 236 53.0
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 5.0e-62 242.7 326 41.7
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 5.5e-61 239.2 319 39.8
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 3.0e-59 233.4 324 38.6
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 8.2e-57 225.3 230 49.1
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.1e-56 224.9 338 39.1
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 5.3e-56 222.6 286 43.4
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.2e-55 221.5 367 36.5
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 3.4e-55 219.9 222 53.2
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 3.8e-54 216.5 319 36.7
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 4.7e-52 209.5 218 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 2.4e-48 197.2 318 36.2
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 5.3e-48 196.1 224 45.5
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 2.6e-47 193.7 216 48.1
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 4.0e-43 179.9 206 49.5
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.7e-41 173.3 170 47.1
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 4.8e-41 172.9 329 33.7
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.0e-39 167.5 135 57.0
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 6.1e-36 156.0 320 29.7
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.8e-35 154.5 271 35.1
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 3.7e-33 146.7 291 33.7
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 7.2e-29 132.5 145 46.9
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 2.8e-28 130.6 190 42.6
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 8.3e-25 119.0 342 27.5
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 2.1e-20 104.4 174 39.1
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 1.8e-19 101.3 85 54.1
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 5.7e-18 96.3 120 45.0
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 3.2e-16 90.5 120 39.2
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 2.0e-15 87.8 123 41.5
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 2.5e-13 80.9 279 27.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.2e-10 72.0 315 23.5
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 2.9e-09 67.4 147 32.7
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.5e-07 60.5 37 70.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 7.8e-07 59.3 260 23.8
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.0e-06 58.9 315 24.1
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.3e-06 57.8 269 24.5
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.0e-06 57.4 259 23.6
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.9e-06 57.0 39 61.5
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.6e-06 56.2 255 23.9
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 8.6e-06 55.8 297 22.2


User provided reference genes

Program Settings