Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g019880 Pisum sativum HOM05D007455 ORTHO05D009431 2.0e-54 218.0 113 100.0
TPR.G19357 Trifolium pratense HOM05D007455 ORTHO05D009431 4.0e-47 193.7 117 86.3
Ca_06217_v3 Cicer arietinum L. HOM05D007455 ORTHO05D009431 8.6e-42 176.0 114 78.9
Medtr5g090210 Medicago truncatula HOM05D007455 ORTHO05D009431 4.3e-41 173.7 116 75.9
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 2.7e-35 154.5 116 62.9
LjContig00049g0012641 Lotus japonicus HOM05D007455 ORTHO05D009431 3.5e-35 154.1 113 72.6
Phvul.008G200500 Phaseolus vulgaris HOM05D007455 ORTHO05D009431 4.6e-35 153.7 114 71.9
arahy.Tifrunner.gnm1.ann1.DBR4AW Arachis hypogaea HOM05D007455 ORTHO05D009431 1.9e-33 148.3 112 66.1
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 2.5e-33 147.9 116 65.5
arahy.Tifrunner.gnm1.ann1.U7VIMI Arachis hypogaea HOM05D007455 ORTHO05D009431 3.3e-33 147.5 112 67.0
Glyma.14G034400 Glycine max HOM05D007455 ORTHO05D009431 5.6e-33 146.7 112 71.4
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 7.3e-33 146.4 116 63.8
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 9.6e-33 146.0 116 63.8
Atru.chr3.2773 Acer truncatum HOM05D007455 ORTHO05D009431 2.1e-32 144.8 112 62.5
Prupe.2G102900 Prunus persica HOM05D007455 ORTHO05D009431 2.1e-32 144.8 112 62.5
VMungo0647G0695 Vigna mungo HOM05D007455 ORTHO05D009431 2.1e-32 144.8 115 67.8
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 4.8e-32 143.7 118 60.2
Dinv36177 Davidia involucrata HOM05D007455 ORTHO05D009431 4.8e-32 143.7 115 60.0
ClCG03G012670 Citrullus lanatus HOM05D007455 ORTHO05D009431 6.2e-32 143.3 116 61.2
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 6.2e-32 143.3 116 60.3
Gohir.D07G124600 Gossypium hirsutum HOM05D007455 ORTHO05D009431 8.1e-32 142.9 116 61.2
Thecc.09G249700 Theobroma cacao HOM05D007455 ORTHO05D009431 1.4e-31 142.1 116 60.3
FAN11G1556 Fragaria x ananassa HOM05D007455 ORTHO05D009431 1.8e-31 141.7 109 61.5
Cpa.g.sc84.2 Carica papaya HOM05D007455 ORTHO05D009431 2.4e-31 141.4 115 59.1
CiPaw.13G151600 Carya illinoinensis HOM05D007455 ORTHO05D009431 2.4e-31 141.4 116 64.7
CSS0022782 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 3.1e-31 141.0 115 59.1
Gorai.001G134400 Gossypium raimondii HOM05D007455 ORTHO05D009431 3.1e-31 141.0 116 61.2
Sabra16G0170600 Salix brachista HOM05D007455 ORTHO05D009431 4.0e-31 140.6 117 59.8
Lalb_Chr10g0106311 Lupinus albus HOM05D007455 ORTHO05D009431 5.3e-31 140.2 117 63.2
Ciclev10017597m.g Citrus clementina HOM05D007455 ORTHO05D009431 9.0e-31 139.4 111 59.5
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 9.0e-31 139.4 117 60.7
FvH4_3g27950 Fragaria vesca HOM05D007455 ORTHO05D009431 1.2e-30 139.0 106 62.3
FAN16G2585 Fragaria x ananassa HOM05D007455 ORTHO05D009431 1.5e-30 138.7 106 62.3
Sed0025332 Sechium edule HOM05D007455 ORTHO05D009431 1.5e-30 138.7 116 58.6
CsaV3_1G043280 Cucumis sativus L. HOM05D007455 ORTHO05D009431 5.8e-30 136.7 116 56.9
Lj1C286T3 Lonicera japonica HOM05D007455 ORTHO05D009431 5.8e-30 136.7 117 57.3
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 5.8e-30 136.7 112 59.8
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 5.8e-30 136.7 115 60.9
Actinidia16375 Actinidia chinensis HOM05D007455 ORTHO05D009431 7.6e-30 136.3 115 60.0
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 7.6e-30 136.3 116 60.3
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.3e-29 135.6 116 57.8
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 2.2e-29 134.8 116 56.9
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 2.2e-29 134.8 116 56.9
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 2.9e-29 134.4 115 58.3
AT5G01110 Arabidopsis thaliana HOM05D007455 ORTHO05D009431 6.4e-29 133.3 112 59.8
Thhalv10012778m.g Eutrema salsugineum HOM05D007455 ORTHO05D009431 1.1e-28 132.5 116 57.8
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 1.1e-28 132.5 112 55.4
Medtr5g089850 Medicago truncatula HOM05D007455 ORTHO05D009431 1.1e-28 132.5 98 71.4
PGR102G2888 Punica granatum HOM05D007455 ORTHO05D009431 1.1e-28 132.5 117 59.0
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 1.4e-28 132.1 116 58.6
MD02G1234700 Malus domestica HOM05D007455 ORTHO05D009431 2.4e-28 131.3 116 55.2
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 4.2e-28 130.6 115 60.0
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 4.2e-28 130.6 115 60.0
Carub.0006s0076 Capsella rubella HOM05D007455 ORTHO05D009431 4.2e-28 130.6 112 57.1
PSO384G2302 Papaver somniferum HOM05D007455 ORTHO05D009431 5.4e-28 130.2 116 56.0
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 7.1e-28 129.8 115 59.1
Sp6g40500 Schrenkiella parvula HOM05D007455 ORTHO05D009431 7.1e-28 129.8 112 58.0
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 9.3e-28 129.4 115 58.3
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 9.3e-28 129.4 115 58.3
RcHm_v2.0_Chr5g0050671 Rosa chinensis HOM05D007455 ORTHO05D009431 9.3e-28 129.4 109 59.6
AUR62006535 Chenopodium quinoa HOM05D007455 ORTHO05D009431 1.6e-27 128.6 112 54.5
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 2.1e-27 128.3 115 54.8
TAR636G1848 Trochodendron aralioides HOM05D007455 ORTHO05D009431 3.5e-27 127.5 102 61.8
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 4.6e-27 127.1 112 55.4
Nitab4.5_0000276g0130 Nicotiana tabacum HOM05D007455 ORTHO05D009431 4.6e-27 127.1 105 59.0
AL6G11100 Arabidopsis lyrata HOM05D007455 ORTHO05D009431 6.0e-27 126.7 107 57.9
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 6.0e-27 126.7 115 54.8
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 6.0e-27 126.7 115 55.7
PGSC0003DMG400001336 Solanum tuberosum HOM05D007455 ORTHO05D009431 6.0e-27 126.7 115 54.8
GSVIVG01037263001 Vitis vinifera HOM05D007455 ORTHO05D009431 6.0e-27 126.7 92 65.2
DCAR_002103 Daucus carota HOM05D007455 ORTHO05D009431 7.9e-27 126.3 116 53.4
CARHR211430 Cardamine hirsuta HOM05D007455 ORTHO05D009431 1.7e-26 125.2 111 56.8
Gohir.A07G120400 Gossypium hirsutum HOM05D007455 ORTHO05D009431 1.7e-26 125.2 96 64.6
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 2.3e-26 124.8 116 53.4
Ah.06g194500 Amaranthus hybridus HOM05D007455 ORTHO05D009431 3.0e-26 124.4 102 57.8
CANSAT25G1433 Cannabis sativa HOM05D007455 ORTHO05D009431 3.9e-26 124.0 101 61.4
Cc01_g05470 Coffea canephora HOM05D007455 ORTHO05D009431 5.1e-26 123.6 101 60.4
MSTRG.12443 Avicennia marina HOM05D007455 ORTHO05D009431 1.5e-25 122.1 115 52.2
ATR0829G035 Amborella trichopoda HOM05D007455 ORTHO05D009431 2.5e-25 121.3 116 49.1
MBI01_g10232_MAGBIO Magnolia biondii HOM05D007455 ORTHO05D009431 4.3e-25 120.6 102 57.8
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 7.3e-25 119.8 115 54.8
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 7.3e-25 119.8 105 57.1
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 7.3e-25 119.8 116 53.4
AUR62000183 Chenopodium quinoa HOM05D007455 ORTHO05D009431 1.3e-24 119.0 102 55.9
FAN25G1872 Fragaria x ananassa HOM05D007455 ORTHO05D009431 1.3e-24 119.0 93 62.4
EL10Ac4g10136 Beta vulgaris HOM05D007455 ORTHO05D009431 2.1e-24 118.2 102 54.9
EL10Ac4g10151 Beta vulgaris HOM05D007455 ORTHO05D009431 2.1e-24 118.2 102 54.9
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 3.6e-24 117.5 116 50.9
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 9.0e-23 112.8 115 52.2
SGA_v2.0_scaffold496G52473 Striga asiatica HOM05D007455 ORTHO05D009431 1.2e-22 112.5 109 53.2
Migut.N02370 Erythranthe guttata HOM05D007455 ORTHO05D009431 2.6e-22 111.3 108 51.9
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 2.4e-20 104.8 116 44.8
Sabra16G0170400 Salix brachista HOM05D007455 ORTHO05D009431 5.5e-20 103.6 82 58.5
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 5.5e-20 103.6 117 47.0
Nn7g36673 Nelumbo nucifera HOM05D007455 ORTHO05D009431 3.0e-18 97.8 77 62.3
Os03g0165100 Oryza sativa ssp. japonica HOM05D007455 ORTHO05D009431 1.1e-12 79.3 102 46.1
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.1e-09 69.3 109 29.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.9e-09 68.6 116 34.5
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 5.7e-09 67.0 115 34.8
BolC3t13332H Brassica oleracea HOM05D007455 ORTHO05D009431 1.3e-08 65.9 86 48.8
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 2.8e-08 64.7 116 32.8
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 4.8e-08 63.9 116 32.8
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 6.3e-08 63.5 113 33.6
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 1.4e-07 62.4 115 30.4
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 1.8e-07 62.0 112 33.0
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 6.9e-07 60.1 109 30.3
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 6.9e-07 60.1 117 30.8
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 1.2e-06 59.3 118 33.9
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 1.2e-06 59.3 105 35.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.0e-06 58.5 118 31.4
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 2.6e-06 58.2 114 33.3
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 4.5e-06 57.4 113 31.0
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 5.9e-06 57.0 112 31.2
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 5.9e-06 57.0 114 32.5
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 5.9e-06 57.0 114 32.5
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 5.9e-06 57.0 112 31.2
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 5.9e-06 57.0 114 28.9
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 7.6e-06 56.6 80 32.5
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 7.6e-06 56.6 80 32.5
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 7.6e-06 56.6 99 31.3
Lalb_Chr01g0001501 Lupinus albus HOM05D006888 ORTHO05D008371 7.6e-06 56.6 110 31.8
AT1G11710 Arabidopsis thaliana HOM05D002890 ORTHO05D009847 1.0e-05 56.2 114 31.6
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 1.0e-05 56.2 105 34.3
Nn5g29749 Nelumbo nucifera HOM05D007390 ORTHO05D009114 1.0e-05 56.2 107 32.7
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 1.0e-05 56.2 108 31.5


User provided reference genes

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