Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 2.8e-166 588.6 300 100.0
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 5.8e-140 501.1 299 87.6
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.2e-137 493.4 298 84.9
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.6e-137 493.0 299 85.3
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 1.3e-99 367.1 295 63.4
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 3.6e-89 332.4 293 57.3
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.0e-88 330.9 290 59.7
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 3.0e-88 329.3 290 57.9
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 2.0e-87 326.6 294 58.2
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.3e-87 325.9 291 57.4
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 5.7e-87 325.1 289 57.8
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 3.7e-86 322.4 292 58.9
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 5.3e-85 318.5 295 58.0
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 7.0e-85 318.2 290 58.6
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.6e-84 317.0 289 59.5
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 5.9e-84 315.1 293 54.3
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 2.9e-83 312.8 290 55.9
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 2.5e-82 309.7 280 58.2
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 5.5e-82 308.5 293 55.6
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 1.2e-81 307.4 295 56.3
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.1e-81 305.1 290 54.5
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 6.1e-81 305.1 293 54.9
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 6.7e-80 301.6 289 54.0
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 4.4e-79 298.9 298 54.0
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 4.4e-79 298.9 288 54.9
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 7.5e-79 298.1 289 53.3
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.3e-78 297.4 290 52.1
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.7e-78 297.0 288 53.8
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.2e-78 296.6 297 53.9
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.8e-78 296.2 291 54.3
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 6.3e-78 295.0 290 52.8
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 8.2e-78 294.7 292 53.1
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 1.8e-77 293.5 290 53.1
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 1.8e-77 293.5 289 51.6
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 9.1e-77 291.2 285 54.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 9.1e-77 291.2 292 51.7
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.6e-76 290.4 290 51.0
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 2.0e-76 290.0 292 51.7
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 2.7e-76 289.7 294 51.0
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 4.5e-76 288.9 245 61.2
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 5.9e-76 288.5 295 50.2
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 5.9e-76 288.5 287 53.3
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 7.7e-76 288.1 291 51.2
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.3e-75 287.3 290 53.1
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 1.3e-75 287.3 269 56.1
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 3.8e-75 285.8 285 53.3
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 5.0e-75 285.4 297 52.9
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 5.0e-75 285.4 291 52.2
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 6.5e-75 285.0 246 61.4
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 6.5e-75 285.0 290 52.1
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 8.5e-75 284.6 292 51.4
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 8.5e-75 284.6 245 57.6
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.5e-74 283.9 290 51.0
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.9e-74 283.5 286 53.8
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.2e-74 282.3 289 52.6
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 4.2e-74 282.3 291 51.9
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 7.2e-74 281.6 289 52.2
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 9.4e-74 281.2 290 52.1
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.2e-73 280.8 294 51.4
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 4.7e-73 278.9 290 50.0
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.7e-73 278.9 294 51.0
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 4.7e-73 278.9 294 51.0
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 4.0e-72 275.8 284 52.5
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.6e-71 273.1 295 49.5
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 3.4e-71 272.7 289 50.5
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 5.7e-71 271.9 292 49.7
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 9.8e-71 271.2 284 50.0
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 2.2e-70 270.0 289 49.5
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 2.2e-70 270.0 290 49.3
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 3.7e-70 269.2 288 50.0
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 3.7e-70 269.2 289 50.2
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 3.7e-70 269.2 289 49.5
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 8.3e-70 268.1 289 49.5
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.4e-69 267.3 241 57.7
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 2.4e-69 266.5 289 50.2
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 1.2e-68 264.2 289 48.1
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.6e-68 263.8 289 49.5
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.6e-68 263.8 289 49.5
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.6e-68 263.8 289 49.8
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.7e-68 263.1 289 49.5
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 3.5e-68 262.7 289 50.2
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 5.9e-68 261.9 382 40.6
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 1.3e-67 260.8 289 49.5
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.7e-67 260.4 289 50.5
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 2.9e-67 259.6 289 49.8
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 3.8e-67 259.2 290 47.6
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 1.1e-66 257.7 289 48.4
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.5e-66 257.3 289 47.4
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.9e-66 256.9 290 48.6
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 2.5e-66 256.5 233 55.8
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.2e-66 256.1 325 44.9
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 5.5e-66 255.4 289 48.8
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 2.1e-65 253.4 302 47.4
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 2.3e-64 250.0 290 48.3
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 6.8e-64 248.4 323 45.5
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.5e-63 247.3 290 46.9
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 2.6e-63 246.5 272 49.6
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.7e-62 243.8 260 50.4
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 2.2e-62 243.4 290 47.9
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 2.8e-62 243.0 291 46.7
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.4e-61 240.7 302 48.0
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 3.1e-61 239.6 298 46.6
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.2e-60 237.7 320 43.8
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 2.0e-60 236.9 291 48.1
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.5e-60 236.1 238 52.5
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.3e-59 234.2 352 39.5
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.3e-59 234.2 352 39.5
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.7e-59 233.8 292 45.9
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.1e-58 231.1 334 42.2
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 4.3e-58 229.2 327 42.2
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.2e-57 227.6 234 50.9
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.6e-57 227.3 289 46.4
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 6.1e-57 225.3 289 45.7
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 1.4e-56 224.2 283 46.6
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.3e-54 217.6 284 44.0
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 8.3e-54 214.9 303 43.2
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 1.8e-53 213.8 240 49.6
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.8e-53 213.8 303 45.2
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 2.0e-52 210.3 297 42.4
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.7e-51 207.2 260 46.2
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 6.6e-51 205.3 298 42.3
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 9.5e-50 201.4 293 41.0
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 3.6e-49 199.5 205 54.1
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 4.7e-49 199.1 232 48.3
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.0e-48 198.0 225 49.3
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 5.2e-48 195.7 289 38.8
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 9.8e-47 191.4 300 40.3
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 1.3e-46 191.0 205 53.2
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 6.4e-46 188.7 292 39.4
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.4e-45 186.8 196 49.0
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.2e-45 186.4 227 48.5
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 4.6e-44 182.6 207 51.2
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 6.0e-44 182.2 214 47.7
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 7.3e-42 175.3 340 36.8
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 3.2e-37 159.8 289 38.1
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.1e-36 157.1 209 45.0
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 6.0e-36 155.6 120 71.7
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 5.6e-34 149.1 289 36.7
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 9.5e-34 148.3 119 55.5
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 1.8e-32 144.1 139 50.4
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 8.9e-32 141.7 139 49.6
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.4e-29 133.7 295 37.6
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.2e-28 131.3 304 37.8
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 7.8e-28 128.6 130 57.7
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 1.0e-27 128.3 103 59.2
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.7e-27 127.5 166 45.2
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 8.6e-27 125.2 174 42.5
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.8e-25 120.2 192 40.6
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.1e-24 118.2 102 61.8
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 2.4e-24 117.1 118 55.1
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 6.9e-24 115.5 125 49.6
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 6.9e-24 115.5 376 27.7
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 7.1e-21 105.5 107 57.9
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 3.9e-19 99.8 291 31.6
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 9.6e-18 95.1 76 55.3
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 8.1e-17 92.0 98 51.0
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 5.3e-16 89.4 201 35.8
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.2e-15 88.2 72 65.3
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 4.5e-15 86.3 98 48.0
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.9e-13 80.9 55 72.7
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 1.3e-11 74.7 67 53.7
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-10 71.6 88 45.5
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.1e-09 67.4 67 52.2
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.6e-09 66.6 52 65.4
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.4e-08 64.7 45 62.2
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 2.4e-08 63.9 86 43.0
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 1.2e-07 61.6 94 36.2
FAN02G3483 Fragaria x ananassa HOM05D004223 ORTHO05D025614 2.6e-07 60.5 87 41.4
FAN13G3149 Fragaria x ananassa HOM05D001129 ORTHO05D025614 3.8e-06 56.6 125 33.6


User provided reference genes

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