Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.6e-211 738.4 360 100.0
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 3.9e-167 591.7 360 80.3
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 1.6e-157 559.7 361 75.6
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 6.5e-154 547.7 355 74.4
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 2.1e-152 542.7 355 74.6
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 3.6e-152 542.0 355 74.9
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.3e-146 523.5 312 79.2
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 1.9e-145 519.6 351 72.4
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 2.3e-143 512.7 363 68.0
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 4.1e-140 501.9 357 71.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 4.2e-137 491.9 369 65.3
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.6e-136 490.0 367 64.6
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 4.5e-123 445.3 339 61.9
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 2.7e-120 436.0 355 58.9
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.0e-119 434.1 340 59.1
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 1.0e-119 434.1 340 58.8
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.0e-119 434.1 336 59.8
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 2.3e-119 433.0 354 58.8
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 8.8e-119 431.0 333 58.9
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.2e-118 430.6 355 58.6
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.2e-118 430.6 334 61.7
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.2e-118 430.6 334 59.3
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.0e-118 429.9 334 61.4
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 4.4e-118 428.7 336 61.9
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 5.7e-118 428.3 334 60.8
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 9.8e-118 427.6 339 61.1
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.7e-117 426.8 334 60.8
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.7e-117 426.8 340 61.8
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 4.9e-117 425.2 339 61.4
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 6.3e-117 424.9 335 60.9
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.1e-116 422.5 336 59.2
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.1e-116 422.5 336 59.2
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.0e-115 419.9 337 59.9
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.7e-115 419.5 336 58.9
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 4.5e-115 418.7 336 59.2
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 7.7e-115 417.9 336 60.7
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 3.8e-114 415.6 335 58.5
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 3.8e-114 415.6 330 60.9
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.9e-113 413.3 351 58.4
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 2.5e-113 412.9 330 58.2
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 3.3e-113 412.5 331 61.0
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 3.6e-112 409.1 337 58.8
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 4.7e-112 408.7 334 57.8
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 4.7e-112 408.7 351 57.0
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.0e-111 407.5 336 57.7
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.8e-111 406.8 337 57.6
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.8e-111 406.8 294 64.6
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 6.8e-111 404.8 346 56.6
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.2e-110 404.1 298 62.1
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.2e-110 404.1 358 54.5
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.2e-110 404.1 296 62.8
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.5e-110 403.7 329 57.4
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.5e-110 403.7 336 57.4
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 5.7e-110 401.7 336 56.2
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.3e-109 400.6 339 55.8
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 4.9e-109 398.7 331 57.7
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 6.3e-109 398.3 337 56.7
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 8.3e-109 397.9 328 58.8
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.4e-108 397.1 335 57.6
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 2.4e-108 396.4 331 56.5
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 5.4e-108 395.2 329 58.1
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 3.5e-107 392.5 351 55.0
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 7.8e-107 391.3 351 55.0
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.0e-106 391.0 333 56.5
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 3.9e-106 389.0 348 55.5
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 3.9e-106 389.0 345 58.0
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.5e-105 387.1 338 54.4
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.3e-105 386.0 288 61.5
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 3.3e-105 386.0 325 56.9
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 7.3e-105 384.8 337 54.9
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.6e-104 383.6 298 59.4
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 4.7e-104 382.1 293 62.8
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 6.1e-104 381.7 327 55.4
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 1.0e-103 380.9 287 59.2
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 4.0e-103 379.0 343 53.6
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 7.0e-100 368.2 353 51.3
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.2e-99 367.5 354 50.8
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 1.5e-97 360.5 358 48.9
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.5e-97 360.5 330 55.2
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.5e-97 359.8 334 52.4
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 3.3e-97 359.4 351 49.6
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 5.6e-97 358.6 336 51.5
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 7.3e-97 358.2 331 51.1
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 7.3e-97 358.2 287 56.4
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.6e-96 357.1 337 51.3
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 3.6e-96 355.9 337 51.3
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 4.7e-96 355.5 294 57.8
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.3e-95 353.2 284 56.0
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 4.0e-95 352.4 337 51.0
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 4.0e-95 352.4 337 51.0
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 8.9e-95 351.3 329 50.2
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.7e-93 347.1 287 56.4
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 4.1e-92 342.4 329 50.5
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 2.5e-89 333.2 298 54.0
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.6e-88 330.5 292 54.5
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 2.8e-88 329.7 351 46.2
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.5e-86 323.9 314 52.2
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 2.0e-86 323.6 286 52.1
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 9.9e-86 321.2 291 51.9
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.2e-85 320.1 328 48.8
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 7.1e-84 315.1 332 48.2
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 3.9e-82 309.3 251 58.2
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.5e-81 306.6 337 48.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.3e-73 279.3 287 47.0
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.6e-72 277.3 230 58.7
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.1e-72 276.9 221 57.9
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 7.9e-67 258.5 287 43.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 5.1e-66 255.8 296 43.2
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 1.1e-65 254.6 300 41.7
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 3.3e-65 253.1 351 39.6
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 3.3e-65 253.1 286 43.4
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 9.6e-65 251.5 344 40.4
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.4e-63 247.7 316 42.1
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 5.3e-55 219.2 190 52.6
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-49 201.1 325 35.4
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.3e-48 198.0 154 58.4
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-46 190.7 311 36.0
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.4e-46 189.9 291 36.8
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-45 188.3 287 34.8
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.9e-45 186.8 315 34.0
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.9e-45 186.8 285 35.8
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-41 174.1 295 36.6
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.7e-40 169.9 306 32.7
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.7e-40 169.9 237 38.4
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-39 168.3 304 33.6
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 297 34.7
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 294 32.3
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 250 36.0
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.3e-39 166.0 296 33.4
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-38 164.5 306 32.7
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.5e-38 164.5 284 32.0
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.8e-37 159.8 293 32.4
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-33 147.9 292 32.9
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.3e-33 146.7 291 32.3
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 9.7e-33 145.2 316 30.7
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-31 140.6 291 30.9
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.3e-25 120.2 270 29.6
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-14 84.3 63 52.4
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 5.0e-13 79.7 74 43.2
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.2e-12 75.9 155 31.6
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 4.0e-10 70.1 42 64.3
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.6e-09 67.4 119 33.6


User provided reference genes

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