Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 1.9e-109 399.4 239 100.0
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 1.0e-70 270.8 191 81.7
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 1.9e-64 250.0 191 73.8
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 4.1e-64 248.8 197 73.6
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 1.6e-63 246.9 189 74.1
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 1.1e-61 240.7 191 74.9
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.9e-45 186.8 183 64.5
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 2.7e-39 166.4 194 56.7
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 1.3e-38 164.1 186 54.8
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 4.8e-36 155.6 191 57.6
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 4.8e-36 155.6 193 53.4
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.8e-35 153.7 191 56.0
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 2.4e-35 153.3 191 52.9
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 1.2e-34 151.0 187 54.5
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 2.0e-34 150.2 195 50.8
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 5.8e-34 148.7 191 52.4
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 6.4e-33 145.2 197 49.2
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 8.4e-33 144.8 188 52.1
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 7.1e-32 141.7 196 50.5
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 7.1e-32 141.7 201 49.3
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 7.1e-32 141.7 190 52.1
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 2.1e-31 140.2 182 52.2
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 3.5e-31 139.4 182 51.6
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 3.5e-31 139.4 191 50.8
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 4.6e-31 139.0 192 47.9
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 4.6e-31 139.0 188 48.4
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 4.6e-31 139.0 202 48.0
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 6.0e-31 138.7 189 51.3
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 1.0e-30 137.9 195 51.3
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.3e-30 137.5 186 50.5
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.3e-30 137.5 187 50.8
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 1.8e-30 137.1 200 49.0
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 3.9e-30 136.0 194 47.9
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 5.1e-30 135.6 197 47.2
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 5.1e-30 135.6 190 50.0
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 5.1e-30 135.6 192 49.0
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 6.7e-30 135.2 192 50.0
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 6.7e-30 135.2 192 49.5
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 1.1e-29 134.4 186 48.9
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 3.3e-29 132.9 196 46.4
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 4.3e-29 132.5 186 44.1
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.6e-28 130.6 209 44.5
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 1.6e-28 130.6 228 45.2
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 1.6e-28 130.6 203 46.8
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 3.7e-28 129.4 192 46.9
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 3.7e-28 129.4 209 44.5
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 8.1e-28 128.3 180 51.1
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 1.4e-27 127.5 203 44.8
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 1.8e-27 127.1 209 43.5
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 2.4e-27 126.7 198 46.5
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 5.3e-27 125.6 200 44.0
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 5.3e-27 125.6 200 44.0
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 9.9e-26 121.3 214 43.5
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 1.7e-25 120.6 179 47.5
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 6.4e-25 118.6 204 45.6
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 6.4e-25 118.6 213 44.1
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 8.4e-25 118.2 178 45.5
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 1.4e-24 117.5 191 43.5
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.4e-24 117.5 199 43.7
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 1.9e-24 117.1 195 43.6
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 2.4e-24 116.7 185 47.6
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 9.3e-24 114.8 199 45.2
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 6.0e-23 112.1 199 43.2
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 1.8e-22 110.5 189 45.0
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 3.0e-22 109.8 198 43.4
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 6.7e-22 108.6 187 41.7
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 1.5e-21 107.5 192 43.2
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 1.9e-21 107.1 194 43.3
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 2.5e-21 106.7 182 44.5
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 3.3e-21 106.3 182 42.3
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 1.3e-20 104.4 207 41.5
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 1.6e-20 104.0 204 45.1
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 2.8e-20 103.2 181 42.5
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 6.2e-20 102.1 219 38.4
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 6.9e-19 98.6 186 39.8
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.2e-18 97.8 165 41.8
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 1.0e-17 94.7 145 45.5
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.7e-17 94.0 195 42.1
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 6.5e-17 92.0 188 39.4
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 8.4e-17 91.7 184 40.2
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 1.9e-16 90.5 166 42.2
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 2.5e-16 90.1 180 41.7
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 4.6e-15 85.9 192 36.5
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 7.9e-15 85.1 183 36.6
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 3.0e-14 83.2 219 36.1
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 6.7e-14 82.0 98 53.1
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 8.7e-14 81.6 226 35.0
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 2.5e-13 80.1 153 45.8
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 7.4e-13 78.6 161 41.0
EL10Ac4g07752 Beta vulgaris HOM05D007542 ORTHO05D009519 6.3e-12 75.5 196 35.2
Glyma.02G293000 Glycine max HOM05D007542 ORTHO05D009519 3.1e-11 73.2 80 56.2
Sopen10g002100 Solanum pennellii HOM05D007542 ORTHO05D009519 1.3e-09 67.8 140 42.1
Aqoxy1G03452 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 1.4e-08 64.3 148 38.5
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 3.2e-08 63.2 141 35.5


User provided reference genes

Program Settings