Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 3.4e-267 924.5 487 100.0
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 3.3e-185 652.1 514 69.8
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.2e-171 607.1 515 67.6
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 3.3e-161 572.4 599 58.9
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 4.7e-147 525.4 515 61.2
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 2.9e-141 506.1 518 60.8
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 4.3e-116 422.5 547 51.2
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 8.0e-115 418.3 583 49.9
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 4.4e-113 412.5 545 49.7
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 7.8e-110 401.7 569 48.0
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 4.6e-102 375.9 615 44.9
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 5.8e-97 359.0 361 58.4
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.2e-94 351.3 573 44.3
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 4.6e-94 349.4 674 40.8
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 6.2e-91 339.0 417 50.1
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 5.8e-89 332.4 355 56.6
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 6.4e-88 328.9 583 44.6
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 4.4e-81 306.2 547 41.1
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 9.3e-79 298.5 520 41.5
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 4.0e-74 283.1 537 38.5
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 6.9e-74 282.3 535 39.4
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 5.8e-73 279.3 572 39.0
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.7e-70 270.4 530 38.3
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 3.9e-69 266.5 541 38.6
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 7.4e-68 262.3 530 37.9
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 9.6e-68 261.9 536 39.2
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 5.3e-66 256.1 530 37.5
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 6.4e-64 249.2 475 39.6
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 1.2e-62 245.0 544 37.5
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 4.6e-62 243.0 527 38.1
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 7.9e-62 242.3 545 36.3
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 6.7e-61 239.2 542 36.3
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.5e-60 238.0 539 37.7
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.6e-60 236.1 538 35.7
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 9.6e-60 235.3 526 37.5
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 3.1e-58 230.3 530 37.4
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 5.8e-57 226.1 513 38.6
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 3.8e-56 223.4 546 35.0
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 8.4e-56 222.2 541 36.4
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 3.2e-55 220.3 509 35.8
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 9.3e-55 218.8 355 42.3
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 9.3e-55 218.8 517 35.0
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 2.7e-54 217.2 557 35.2
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.8e-53 214.5 551 35.6
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 6.7e-53 212.6 522 35.1
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 8.7e-53 212.2 530 37.2
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.6e-51 208.0 535 34.0
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 2.2e-51 207.6 533 35.5
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 3.7e-51 206.8 521 34.5
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 4.8e-51 206.5 538 34.9
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 6.3e-51 206.1 479 34.2
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 8.2e-51 205.7 532 35.7
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 3.1e-50 203.8 538 32.9
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 5.3e-50 203.0 439 35.3
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 5.3e-50 203.0 533 35.1
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.2e-49 201.8 526 34.4
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 1.5e-49 201.4 536 34.9
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 2.0e-49 201.1 472 35.6
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.6e-49 200.7 519 35.8
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 5.9e-49 199.5 535 33.8
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.0e-48 198.7 521 32.6
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.0e-48 198.7 508 35.4
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 1.0e-48 198.7 524 34.5
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.3e-48 198.4 511 34.1
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 5.0e-48 196.4 540 34.8
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 5.0e-48 196.4 416 38.2
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 5.0e-48 196.4 393 36.9
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.4e-47 194.9 398 36.2
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.9e-47 194.5 467 36.2
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 4.2e-47 193.4 533 34.1
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 5.5e-47 193.0 544 34.2
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 7.2e-47 192.6 467 36.0
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 9.3e-47 192.2 510 34.3
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.6e-46 191.4 561 32.6
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 2.7e-46 190.7 520 34.6
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 7.9e-46 189.1 361 39.6
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 5.1e-45 186.4 393 35.9
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 5.1e-45 186.4 510 32.7
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.1e-44 185.3 425 36.9
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 3.3e-44 183.7 475 33.5
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 3.3e-44 183.7 479 34.4
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 4.3e-44 183.3 410 34.4
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 7.4e-44 182.6 479 36.5
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 9.7e-44 182.2 473 33.8
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 1.3e-43 181.8 481 34.7
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 4.1e-42 176.8 519 35.8
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 6.9e-42 176.0 612 30.6
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.5e-41 174.9 346 34.1
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 4.2e-39 166.8 594 29.8
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 6.1e-38 162.9 622 29.6
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 6.1e-38 162.9 622 29.6
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 6.7e-37 159.5 616 29.9
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 8.8e-37 159.1 561 31.2
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.5e-36 158.3 618 29.6
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 9.7e-36 155.6 530 31.3
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 9.7e-36 155.6 417 33.8
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.2e-35 154.5 562 30.1
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 4.8e-35 153.3 413 32.4
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 5.3e-34 149.8 491 29.5
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.5e-33 148.3 395 32.7
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.9e-31 141.4 375 34.1
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.8e-29 134.8 579 26.4
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 3.9e-29 133.7 571 28.4
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 3.9e-29 133.7 517 30.4
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 7.4e-28 129.4 253 36.4
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 4.8e-27 126.7 567 28.9
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 4.1e-26 123.6 498 31.3
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.0e-25 121.3 258 36.4
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.6e-25 120.9 489 32.3
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 4.5e-25 120.2 671 26.7
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.4e-21 108.6 502 28.3
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.6e-20 104.4 217 36.9
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 3.8e-16 90.5 103 53.4
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 8.5e-16 89.4 121 47.9
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.6e-14 84.0 229 32.3
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 4.8e-11 73.6 70 52.9
FvH4_5g03070 Fragaria vesca HOM05D012998 ORTHO05D007556 4.7e-06 57.0 97 43.3
FvH4_6g06532 Fragaria vesca HOM05D012998 ORTHO05D025560 4.7e-06 57.0 97 43.3
FAN07G1843 Fragaria x ananassa HOM05D012998 ORTHO05D025560 4.7e-06 57.0 97 43.3


User provided reference genes

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