Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.5e-51 206.1 114 100.0
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 4.4e-48 194.5 111 96.4
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.7e-31 139.4 83 86.7
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 2.9e-31 138.7 80 90.0
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 4.9e-31 137.9 81 88.9
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 6.4e-31 137.5 83 85.5
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 6.4e-31 137.5 83 85.5
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.4e-31 137.5 83 85.5
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.4e-30 136.3 83 84.3
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.9e-30 136.0 83 84.3
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.9e-30 136.0 83 84.3
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.4e-30 135.6 83 85.5
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.1e-30 134.8 87 82.8
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 5.4e-30 134.4 83 81.9
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 7.1e-30 134.0 83 83.1
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 9.2e-30 133.7 83 81.9
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 9.2e-30 133.7 83 84.3
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 9.2e-30 133.7 80 87.5
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 9.2e-30 133.7 83 81.9
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.2e-29 133.3 83 81.9
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 81.9
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 81.9
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 81.9
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 81.9
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 81.9
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 81.9
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 84.3
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.6e-29 132.9 83 84.3
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.6e-29 132.9 91 76.9
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.1e-29 132.5 83 81.9
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 2.1e-29 132.5 83 80.7
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 2.1e-29 132.5 83 79.5
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 2.7e-29 132.1 83 81.9
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.7e-29 132.1 80 83.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 2.7e-29 132.1 83 80.7
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 3.5e-29 131.7 81 84.0
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.5e-29 131.7 83 80.7
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 4.6e-29 131.3 83 81.9
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 80.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 78.3
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 81.9
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 81.9
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 79.5
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 80.7
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.8e-29 130.6 83 80.7
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 7.8e-29 130.6 83 79.5
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 7.8e-29 130.6 83 80.7
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 7.8e-29 130.6 83 83.1
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 7.8e-29 130.6 83 81.9
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 7.8e-29 130.6 83 79.5
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.0e-28 130.2 83 79.5
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.0e-28 130.2 83 79.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.3e-28 129.8 83 79.5
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.3e-28 129.8 83 79.5
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.7e-28 129.4 83 78.3
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.7e-28 129.4 83 79.5
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.7e-28 129.4 83 80.7
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 2.3e-28 129.0 83 79.5
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.3e-28 129.0 81 82.7
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.3e-28 129.0 83 78.3
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-28 128.6 83 79.5
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 3.9e-28 128.3 83 78.3
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 3.9e-28 128.3 83 77.1
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 3.9e-28 128.3 83 77.1
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.9e-28 128.3 83 81.9
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.9e-28 128.3 83 78.3
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 5.1e-28 127.9 77 84.4
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 5.1e-28 127.9 83 77.1
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 5.1e-28 127.9 83 80.7
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 6.6e-28 127.5 81 79.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 6.6e-28 127.5 83 78.3
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 6.6e-28 127.5 83 77.1
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 8.6e-28 127.1 83 77.1
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 8.6e-28 127.1 83 77.1
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 8.6e-28 127.1 83 77.1
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 8.6e-28 127.1 83 79.5
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.1e-27 126.7 77 85.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.1e-27 126.7 83 77.1
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-27 126.3 80 81.2
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-27 126.3 80 80.0
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.5e-27 126.3 80 80.0
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.5e-27 126.3 80 80.0
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.5e-27 126.3 80 80.0
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.5e-27 126.3 83 77.1
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.5e-27 126.3 83 77.1
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.5e-27 126.3 83 78.3
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.5e-27 126.3 83 79.5
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.9e-27 125.9 83 77.1
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.9e-27 125.9 80 81.2
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.5e-27 125.6 83 79.5
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.5e-27 125.6 83 75.9
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.5e-27 125.6 83 77.1
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 3.3e-27 125.2 80 78.8
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.3e-27 125.2 83 77.1
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 3.3e-27 125.2 82 78.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 3.3e-27 125.2 79 81.0
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.3e-27 124.8 80 78.8
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 4.3e-27 124.8 83 74.7
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.6e-27 124.4 83 77.1
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.6e-27 124.4 83 77.1
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 5.6e-27 124.4 83 74.7
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 7.3e-27 124.0 83 75.9
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 9.6e-27 123.6 83 77.1
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.2e-26 123.2 80 77.5
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.2e-26 123.2 83 77.1
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.2e-26 123.2 83 74.7
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 1.2e-26 123.2 83 74.7
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.2e-26 123.2 83 78.3
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-26 122.5 83 75.9
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 2.8e-26 122.1 83 75.9
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.8e-26 122.1 83 75.9
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 3.6e-26 121.7 83 73.5
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.8e-25 119.4 83 73.5
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.8e-25 119.4 82 73.2
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.8e-25 119.4 80 75.0
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 3.1e-25 118.6 77 76.6
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-24 116.7 114 59.6
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.2e-24 116.7 82 73.2
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.5e-24 116.3 80 75.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.4e-24 114.8 80 73.8
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 4.4e-24 114.8 81 70.4
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 7.1e-22 107.5 64 85.9
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.2e-21 106.7 78 70.5
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.0e-20 102.1 66 77.3
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-19 99.8 69 73.9
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.6e-19 97.8 64 76.6
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 9.6e-19 97.1 80 63.8
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.6e-18 96.3 63 77.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 4.8e-18 94.7 76 67.1
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.8e-17 92.8 81 56.8
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 5.3e-17 91.3 80 58.8
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 9.0e-17 90.5 63 74.6
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.4e-14 82.4 81 53.1
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 4.2e-14 81.6 50 80.0
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 7.1e-14 80.9 64 64.1
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 9.3e-14 80.5 51 80.4
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.6e-13 78.2 80 53.8
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.3e-12 76.6 48 79.2
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 2.3e-12 75.9 51 78.4
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 8.7e-12 73.9 43 81.4
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-11 73.2 46 76.1
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 4.3e-11 71.6 44 77.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 7.4e-11 70.9 45 77.8
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 9.6e-11 70.5 73 50.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.3e-10 70.1 46 71.7
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-10 70.1 44 75.0
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 2.8e-10 68.9 74 51.4
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 3.6e-10 68.6 42 81.0
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-09 67.0 56 64.3
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.1e-09 67.0 48 66.7
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.3e-09 64.7 51 58.8
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 5.3e-09 64.7 76 46.1
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.8e-07 58.5 59 50.8
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.9e-06 56.2 52 61.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.9e-06 56.2 35 77.1
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.1e-06 54.3 33 78.8


User provided reference genes

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