Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g009720 Pisum sativum HOM05D001360 ORTHO05D328454 1.9e-77 292.7 178 100.0
Psat0s2511g0040 Pisum sativum HOM05D054813 ORTHO05D001231 6.0e-60 234.6 170 78.2
Psat0s3664g0040 Pisum sativum HOM05D054813 ORTHO05D326675 4.8e-25 118.6 94 69.1
A05p40700 Brassica napus HOM05D001360 ORTHO05D001231 6.5e-14 81.6 126 42.1
BraA05t22801Z Brassica rapa HOM05D001360 ORTHO05D001231 6.5e-14 81.6 126 42.1
BcaC05g29543 Brassica carinata HOM05D001360 ORTHO05D001231 2.5e-13 79.7 152 36.8
BcaC05g29541 Brassica carinata HOM05D001360 ORTHO05D001231 5.5e-13 78.6 126 41.3
DCAR_008397 Daucus carota HOM05D001360 ORTHO05D001231 5.5e-13 78.6 126 38.9
DCAR_018615 Daucus carota HOM05D001360 ORTHO05D001231 5.5e-13 78.6 140 38.6
C05p59810 Brassica napus HOM05D001360 ORTHO05D001231 7.2e-13 78.2 150 36.7
BolC5t34635H Brassica oleracea HOM05D001360 ORTHO05D001231 7.2e-13 78.2 150 36.7
Sc17g0001600 Simmondsia chinensis HOM05D001360 ORTHO05D001231 1.6e-12 77.0 126 40.5
AL3G18830 Arabidopsis lyrata HOM05D001360 ORTHO05D001231 2.7e-12 76.3 126 40.5
AT3G07510 Arabidopsis thaliana HOM05D001360 ORTHO05D001231 2.7e-12 76.3 126 40.5
CAN.G253.3 Capsicum annuum HOM05D001360 ORTHO05D001231 4.7e-12 75.5 146 37.7
Cpa.g.sc8.50 Carica papaya HOM05D001360 ORTHO05D001231 4.7e-12 75.5 126 38.1
Peaxi162Scf00841g00032 Petunia axillaris HOM05D001360 ORTHO05D001231 4.7e-12 75.5 126 38.9
Carub.0003s0705 Capsella rubella HOM05D001360 ORTHO05D001231 6.1e-12 75.1 126 39.7
Solyc09g047930.1 Solanum lycopersicum HOM05D001360 ORTHO05D001231 6.1e-12 75.1 126 40.5
Sopen09g016040 Solanum pennellii HOM05D001360 ORTHO05D001231 6.1e-12 75.1 126 40.5
THA.LOC104822465 Tarenaya hassleriana HOM05D001360 ORTHO05D001231 6.1e-12 75.1 126 38.9
Lj1C103G10 Lonicera japonica HOM05D001360 ORTHO05D001231 8.0e-12 74.7 111 42.3
MD05G1156100 Malus domestica HOM05D001360 ORTHO05D001231 8.0e-12 74.7 148 34.5
Hund09478 Selenicereus undatus HOM05D001360 ORTHO05D001231 8.0e-12 74.7 126 39.7
PGSC0003DMG400029171 Solanum tuberosum HOM05D001360 ORTHO05D001231 8.0e-12 74.7 126 39.7
Thhalv10021445m.g Eutrema salsugineum HOM05D001360 ORTHO05D001231 1.0e-11 74.3 126 39.7
Lj1g0010077 Lotus japonicus HOM05D001360 ORTHO05D001231 1.0e-11 74.3 126 38.9
Manes.12G060113 Manihot esculenta HOM05D001360 ORTHO05D001231 1.0e-11 74.3 126 38.9
Nitab4.5_0000038g0200 Nicotiana tabacum HOM05D001360 ORTHO05D001231 1.0e-11 74.3 146 34.9
Sp3g06420 Schrenkiella parvula HOM05D001360 ORTHO05D001231 1.0e-11 74.3 126 39.7
TWI18G0104 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 1.0e-11 74.3 126 38.9
CARHR082160 Cardamine hirsuta HOM05D001360 ORTHO05D001231 1.4e-11 73.9 126 39.7
Aa31LG4G9720 Aethionema arabicum HOM05D001360 ORTHO05D001231 1.8e-11 73.6 126 38.9
BcaC01g04279 Brassica carinata HOM05D001360 ORTHO05D001231 1.8e-11 73.6 126 39.7
BolC3t16559H Brassica oleracea HOM05D001360 ORTHO05D001231 1.8e-11 73.6 126 39.7
Lalb_Chr03g0040971 Lupinus albus HOM05D001360 ORTHO05D001231 1.8e-11 73.6 126 38.9
Nitab4.5_0005686g0040 Nicotiana tabacum HOM05D001360 ORTHO05D001231 1.8e-11 73.6 146 36.3
TAR362G0852 Trochodendron aralioides HOM05D001360 ORTHO05D001231 1.8e-11 73.6 149 36.9
C03p42910 Brassica napus HOM05D001360 ORTHO05D001231 2.3e-11 73.2 126 39.7
CiPaw.13G057500 Carya illinoinensis HOM05D001360 ORTHO05D001231 2.3e-11 73.2 126 36.5
Haze_03595 Corylus avellana HOM05D001360 ORTHO05D001231 2.3e-11 73.2 126 38.1
Manes.13G055900 Manihot esculenta HOM05D001360 ORTHO05D001231 2.3e-11 73.2 126 38.9
arahy.Tifrunner.gnm1.ann1.H3Z9GC Arachis hypogaea HOM05D001360 ORTHO05D001231 3.0e-11 72.8 145 36.6
arahy.Tifrunner.gnm1.ann1.MSL63E Arachis hypogaea HOM05D001360 ORTHO05D001231 3.0e-11 72.8 145 36.6
BcaB03g14697 Brassica carinata HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 38.9
A03p35290 Brassica napus HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 38.9
MELO3C015727.2 Cucumis melo HOM05D001360 ORTHO05D001231 3.0e-11 72.8 143 36.4
CsaV3_7G027300 Cucumis sativus L. HOM05D001360 ORTHO05D001231 3.0e-11 72.8 143 36.4
FvH4_2g17600 Fragaria vesca HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 37.3
FAN15G0553 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 37.3
FAN15G1977 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 37.3
FAN24G2010 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 37.3
FAN27G0972 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 37.3
FAN27G1413 Fragaria x ananassa HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 37.3
Lsat_1_v5_gn_9_16561 Lactuca sativa HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 38.1
Medtr7g051210 Medicago truncatula HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 38.9
RcHm_v2.0_Chr6g0282541 Rosa chinensis HOM05D001360 ORTHO05D001231 3.0e-11 72.8 126 37.3
Aa31LG5G23600 Aethionema arabicum HOM05D001360 ORTHO05D001231 3.9e-11 72.4 126 38.1
EL10Ac5g10593 Beta vulgaris HOM05D001360 ORTHO05D001231 3.9e-11 72.4 126 38.1
AUR62008073 Chenopodium quinoa HOM05D001360 ORTHO05D001231 3.9e-11 72.4 126 38.9
AUR62028652 Chenopodium quinoa HOM05D001360 ORTHO05D001231 3.9e-11 72.4 126 38.9
Ca_07441_v3 Cicer arietinum L. HOM05D001360 ORTHO05D001231 3.9e-11 72.4 126 38.1
Dinv10451 Davidia involucrata HOM05D001360 ORTHO05D001231 3.9e-11 72.4 140 36.4
HPP92_022054 Vanilla planifolia HOM05D001360 ORTHO05D001231 3.9e-11 72.4 133 36.1
BraA03t12707Z Brassica rapa HOM05D001360 ORTHO05D001231 6.7e-11 71.6 126 38.1
ClCG09G007830 Citrullus lanatus HOM05D001360 ORTHO05D001231 6.7e-11 71.6 126 38.1
Duzib138G1389 Durio zibethinus HOM05D001360 ORTHO05D001231 6.7e-11 71.6 126 37.3
Psat3g151800 Pisum sativum HOM05D001360 ORTHO05D001231 6.7e-11 71.6 126 38.1
Potri.002G239500 Populus trichocarpa HOM05D001360 ORTHO05D001231 6.7e-11 71.6 126 38.1
ECA248G1556 Erigeron canadensis HOM05D001360 ORTHO05D001231 8.8e-11 71.2 136 34.6
Lsat_1_v5_gn_5_176620 Lactuca sativa HOM05D001360 ORTHO05D001231 8.8e-11 71.2 135 37.0
Potri.014G176000 Populus trichocarpa HOM05D001360 ORTHO05D001231 8.8e-11 71.2 126 36.5
Gohir.A11G143400 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.1e-10 70.9 126 37.3
Gohir.D07G094700 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.1e-10 70.9 131 35.9
Gohir.D11G149800 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.1e-10 70.9 126 37.3
Gorai.001G102000 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.1e-10 70.9 131 35.9
Gorai.007G160700 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.1e-10 70.9 126 37.3
HanXRQChr08g0231831 Helianthus annuus HOM05D001360 ORTHO05D001231 1.1e-10 70.9 137 33.6
Prupe.8G188200 Prunus persica HOM05D001360 ORTHO05D001231 1.1e-10 70.9 148 33.1
QL09p047247 Quercus lobata HOM05D000003 ORTHO05D001231 1.1e-10 70.9 126 37.3
QL09p047536 Quercus lobata HOM05D001360 ORTHO05D001231 1.1e-10 70.9 126 37.3
CiPaw.14G045000 Carya illinoinensis HOM05D001360 ORTHO05D001231 1.5e-10 70.5 148 34.5
Glyma.18G154000 Glycine max HOM05D001360 ORTHO05D001231 1.5e-10 70.5 126 38.1
MD10G1149800 Malus domestica HOM05D001360 ORTHO05D001231 1.5e-10 70.5 148 33.1
Sed0025553 Sechium edule HOM05D001360 ORTHO05D001231 1.5e-10 70.5 126 38.1
Thecc.01G208800 Theobroma cacao HOM05D001360 ORTHO05D001231 1.5e-10 70.5 126 36.5
Glyma.08G343000 Glycine max HOM05D001360 ORTHO05D001231 2.0e-10 70.1 146 35.6
Gohir.A07G090000 Gossypium hirsutum HOM05D001360 ORTHO05D001231 2.0e-10 70.1 131 35.1
Phvul.008G137900 Phaseolus vulgaris HOM05D001360 ORTHO05D001231 2.0e-10 70.1 126 38.9
Rhsim13G0054500 Rhododendron simsii HOM05D001360 ORTHO05D001231 2.0e-10 70.1 124 37.9
SalBow1G0984 Salvia bowleyana HOM05D001360 ORTHO05D001231 2.0e-10 70.1 126 38.9
Duzib211G0121 Durio zibethinus HOM05D001360 ORTHO05D001231 2.6e-10 69.7 126 36.5
Eucgr.K02084 Eucalyptus grandis HOM05D001360 ORTHO05D001231 2.6e-10 69.7 126 37.3
PGR044G0829 Punica granatum HOM05D001360 ORTHO05D001231 2.6e-10 69.7 126 36.5
Sabra02G0182400 Salix brachista HOM05D000001 ORTHO05D000003 2.6e-10 69.7 126 35.7
Sabra14G0134900 Salix brachista HOM05D001360 ORTHO05D001231 2.6e-10 69.7 126 35.7
VMungo1383G0442 Vigna mungo HOM05D001360 ORTHO05D001231 2.6e-10 69.7 126 38.9
Ciclev10016823m.g Citrus clementina HOM05D001360 ORTHO05D001231 3.3e-10 69.3 126 37.3
MBI19_g20928_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 3.3e-10 69.3 126 38.1
PSO732G0065 Papaver somniferum HOM05D001360 ORTHO05D001231 3.3e-10 69.3 126 37.3
CSS0034994 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 4.4e-10 68.9 124 38.7
Lj2P1114T30 Lonicera japonica HOM05D001360 ORTHO05D001231 4.4e-10 68.9 126 38.9
MBI04_g26965_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 4.4e-10 68.9 126 38.1
SalBow3G1192 Salvia bowleyana HOM05D001360 ORTHO05D001231 4.4e-10 68.9 126 38.1
Sopen06g034350 Solanum pennellii HOM05D001360 ORTHO05D001231 4.4e-10 68.9 137 30.7
Aqoxy6G00986 Aquilegia oxysepala HOM05D001360 ORTHO05D001231 5.7e-10 68.6 126 36.5
CANSAT01G1149 Cannabis sativa HOM05D001360 ORTHO05D001231 5.7e-10 68.6 149 34.9
Migut.N00677 Erythranthe guttata HOM05D001360 ORTHO05D001231 5.7e-10 68.6 126 37.3
Gohir.A07G158300 Gossypium hirsutum HOM05D001360 ORTHO05D001231 5.7e-10 68.6 149 33.6
Solyc06g082960.3 Solanum lycopersicum HOM05D001360 ORTHO05D001231 5.7e-10 68.6 138 29.7
vmacro02835 Vaccinium macrocarpon HOM05D001360 ORTHO05D001231 5.7e-10 68.6 149 34.2
Dinv28798 Davidia involucrata HOM05D001360 ORTHO05D001231 7.4e-10 68.2 124 37.1
TAR633G1941 Trochodendron aralioides HOM05D001360 ORTHO05D001231 7.4e-10 68.2 143 34.3
CDE11G0645 Ceratophyllum demersum HOM05D001360 ORTHO05D001231 9.7e-10 67.8 126 35.7
PSO675G2269 Papaver somniferum HOM05D001360 ORTHO05D001231 9.7e-10 67.8 126 36.5
PSO732G0270 Papaver somniferum HOM05D001360 ORTHO05D001231 9.7e-10 67.8 126 36.5
Gohir.D07G167900 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.3e-09 67.4 149 33.6
Gorai.N002200 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.3e-09 67.4 149 33.6
MD05G1155400 Malus domestica HOM05D001360 ORTHO05D001231 1.3e-09 67.4 128 38.3
SGA_v2.0_scaffold77G25308 Striga asiatica HOM05D001360 ORTHO05D001231 1.3e-09 67.4 126 36.5
Rhsim13G0054600 Rhododendron simsii HOM05D001360 ORTHO05D001231 1.7e-09 67.0 154 34.4
unitig_0.g1226 Utricularia gibba HOM05D001360 ORTHO05D001231 1.7e-09 67.0 147 32.0
Cc01_g15940 Coffea canephora HOM05D001360 ORTHO05D001231 2.2e-09 66.6 126 38.1
Actinidia23349 Actinidia chinensis HOM05D001360 ORTHO05D001231 2.8e-09 66.2 134 37.3
Dinv35454 Davidia involucrata HOM05D001360 ORTHO05D001231 2.8e-09 66.2 129 37.2
MD05G1155900 Malus domestica HOM05D001360 ORTHO05D001231 2.8e-09 66.2 126 35.7
MSTRG.12746 Avicennia marina HOM05D001360 ORTHO05D001231 3.7e-09 65.9 124 36.3
Actinidia29999 Actinidia chinensis HOM05D001360 ORTHO05D001231 1.4e-08 63.9 134 37.3
Thecc.01G208900 Theobroma cacao HOM05D001360 ORTHO05D001231 1.4e-08 63.9 145 33.1
CSS0047701 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 1.8e-08 63.5 149 33.6
PGSC0003DMG400024295 Solanum tuberosum HOM05D001360 ORTHO05D001231 2.4e-08 63.2 149 30.2
Manes.12G060112 Manihot esculenta HOM05D001360 ORTHO05D001231 3.1e-08 62.8 145 30.3
Peaxi162Scf01242g00035 Petunia axillaris HOM05D001360 ORTHO05D001231 3.1e-08 62.8 131 29.8
Potri.014G176300 Populus trichocarpa HOM05D001360 ORTHO05D001231 3.1e-08 62.8 137 33.6
Gorai.001G227700 Gossypium raimondii HOM05D001360 ORTHO05D001231 5.3e-08 62.0 147 32.0
COL.COLO4_07044 Corchorus olitorius HOM05D001360 ORTHO05D001231 7.0e-08 61.6 143 30.1
Duzib138G1870 Durio zibethinus HOM05D001360 ORTHO05D001231 1.2e-07 60.8 136 32.4
SEGI_27219 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 1.2e-07 60.8 138 31.2
CSS0036779 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 1.6e-07 60.5 124 36.3
Gohir.A07G195900 Gossypium hirsutum HOM05D001360 ORTHO05D001231 2.0e-07 60.1 131 32.8
Potri.014G176400 Populus trichocarpa HOM05D001360 ORTHO05D001231 2.6e-07 59.7 149 31.5
Ciclev10018250m.g Citrus clementina HOM05D001360 ORTHO05D001231 3.5e-07 59.3 143 29.4
GSVIVG01005237001 Vitis vinifera HOM05D001360 ORTHO05D001231 3.5e-07 59.3 118 34.7
Oeu003668.1 Olea europaea HOM05D001360 ORTHO05D001231 4.5e-07 58.9 111 33.3
TWI75G1230 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 4.5e-07 58.9 114 34.2
SEGI_12504 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 5.9e-07 58.5 126 32.5
Sabra14G0135000 Salix brachista HOM05D001360 ORTHO05D001231 7.7e-07 58.2 147 31.3
Cpa.g.sc8.51 Carica papaya HOM05D001360 ORTHO05D000611 1.0e-06 57.8 140 34.3
Nn1g09615 Nelumbo nucifera HOM05D001360 ORTHO05D001231 1.0e-06 57.8 104 38.5
ATR0661G007 Amborella trichopoda HOM05D001360 ORTHO05D001231 1.3e-06 57.4 145 29.7
DCAR_029880 Daucus carota HOM05D001360 ORTHO05D001231 1.3e-06 57.4 133 33.1
Migut.D00746 Erythranthe guttata HOM05D001360 ORTHO05D001231 2.2e-06 56.6 129 30.2
MSTRG.21299 Avicennia marina HOM05D001360 ORTHO05D001231 3.8e-06 55.8 133 27.8
Manes.12G060111 Manihot esculenta HOM05D001360 ORTHO05D001231 5.0e-06 55.5 140 29.3
CSS0011998 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 6.5e-06 55.1 119 33.6
DCAR_012463 Daucus carota HOM05D001360 ORTHO05D001231 6.5e-06 55.1 124 29.0
Manes.12G060101 Manihot esculenta HOM05D001360 ORTHO05D001231 6.5e-06 55.1 141 26.2
Ciclev10016664m.g Citrus clementina HOM05D001360 ORTHO05D001231 8.5e-06 54.7 143 28.7
DCAR_012461 Daucus carota HOM05D001360 ORTHO05D001231 8.5e-06 54.7 124 28.2
DCAR_012462 Daucus carota HOM05D001360 ORTHO05D001231 8.5e-06 54.7 127 31.5
DCAR_015817 Daucus carota HOM05D001360 ORTHO05D001231 8.5e-06 54.7 138 29.7
Migut.N00679 Erythranthe guttata HOM05D001360 ORTHO05D001231 8.5e-06 54.7 126 30.2
Manes.12G059900 Manihot esculenta HOM05D001360 ORTHO05D001231 8.5e-06 54.7 141 27.0


User provided reference genes

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