Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g008880 Pisum sativum HOM05D000913 ORTHO05D000687 6.4e-35 150.2 77 100.0
TPR.G14168 Trifolium pratense HOM05D000913 ORTHO05D000687 6.5e-27 123.6 76 76.3
Ca_06376_v3 Cicer arietinum L. HOM05D000913 ORTHO05D000687 2.5e-26 121.7 76 77.6
Medtr5g094730 Medicago truncatula HOM05D000913 ORTHO05D000687 2.7e-25 118.2 77 77.9
LjContig00272g0015676 Lotus japonicus HOM05D000913 ORTHO05D000687 1.0e-24 116.3 77 68.8
Glyma.02G298100 Glycine max HOM05D000913 ORTHO05D000687 8.2e-22 106.7 75 68.0
Phvul.008G275900 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 2.4e-21 105.1 75 68.0
arahy.Tifrunner.gnm1.ann1.6W1Y21 Arachis hypogaea HOM05D000913 ORTHO05D000687 2.7e-17 91.7 77 63.6
arahy.Tifrunner.gnm1.ann1.D6KND3 Arachis hypogaea HOM05D000913 ORTHO05D000687 2.7e-17 91.7 77 63.6
Lalb_Chr04g0247951 Lupinus albus HOM05D000913 ORTHO05D000687 7.9e-17 90.1 74 62.2
Dinv16085 Davidia involucrata HOM05D000913 ORTHO05D000687 8.5e-11 70.1 72 55.6
Cpa.g.sc12.187 Carica papaya HOM05D000913 ORTHO05D000687 3.2e-10 68.2 62 53.2
Duzib213G0636 Durio zibethinus HOM05D000913 ORTHO05D000687 3.2e-10 68.2 72 47.2
Thecc.07G019800 Theobroma cacao HOM05D000913 ORTHO05D000687 3.2e-10 68.2 72 47.2
Prupe.4G234700 Prunus persica HOM05D000913 ORTHO05D000687 4.2e-10 67.8 72 52.8
Duzib213G0838 Durio zibethinus HOM05D000913 ORTHO05D000687 5.5e-10 67.4 72 45.8
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 7.2e-10 67.0 75 42.7
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.2e-09 66.2 72 43.1
PSO017G1569 Papaver somniferum HOM05D000913 ORTHO05D000687 1.6e-09 65.9 73 45.2
Lalb_Chr18g0057461 Lupinus albus HOM05D000913 ORTHO05D000687 2.7e-09 65.1 75 42.7
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 2.7e-09 65.1 71 46.5
Cpa.g.sc12.188 Carica papaya HOM05D000913 ORTHO05D000687 3.6e-09 64.7 62 48.4
Dinv03822 Davidia involucrata HOM05D000913 ORTHO05D000687 3.6e-09 64.7 72 47.2
QL08p005455 Quercus lobata HOM05D000913 ORTHO05D000687 3.6e-09 64.7 72 48.6
Gorai.009G446400 Gossypium raimondii HOM05D000913 ORTHO05D000687 6.1e-09 63.9 72 44.4
Dinv03824 Davidia involucrata HOM05D000913 ORTHO05D000687 7.9e-09 63.5 72 47.2
Gohir.A04G009400 Gossypium hirsutum HOM05D000913 ORTHO05D000687 7.9e-09 63.5 72 43.1
MD03G1188500 Malus domestica HOM05D000913 ORTHO05D000687 7.9e-09 63.5 72 50.0
VMungo0647G1590 Vigna mungo HOM05D000913 ORTHO05D000687 1.0e-08 63.2 72 43.1
Nn1g06060 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.4e-08 62.8 72 44.4
PSO017G4708 Papaver somniferum HOM05D000913 ORTHO05D000687 1.4e-08 62.8 73 43.8
PSO573G0012 Papaver somniferum HOM05D000913 ORTHO05D000687 1.4e-08 62.8 73 43.8
MD11G1204600 Malus domestica HOM05D000913 ORTHO05D000687 1.8e-08 62.4 71 49.3
Nitab4.5_0002517g0020 Nicotiana tabacum HOM05D000913 ORTHO05D000687 1.8e-08 62.4 72 52.8
MD10G1233100 Malus domestica HOM05D000913 ORTHO05D000687 2.3e-08 62.0 73 47.9
PSO675G3882 Papaver somniferum HOM05D000913 ORTHO05D000687 3.0e-08 61.6 73 46.6
MD03G1038900 Malus domestica HOM05D000913 ORTHO05D000687 3.9e-08 61.2 71 43.7
Psat1g171760 Pisum sativum HOM05D000913 ORTHO05D000687 5.1e-08 60.8 63 42.9
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 6.7e-08 60.5 70 42.9
Duzib268G1311 Durio zibethinus HOM05D000913 ORTHO05D000687 6.7e-08 60.5 75 41.3
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 6.7e-08 60.5 63 46.0
Manes.03G137300 Manihot esculenta HOM05D000913 ORTHO05D000687 6.7e-08 60.5 63 49.2
SalBow8G2374 Salvia bowleyana HOM05D000913 ORTHO05D000687 6.7e-08 60.5 73 47.9
PGSC0003DMG401029798 Solanum tuberosum HOM05D000913 ORTHO05D000687 6.7e-08 60.5 72 51.4
COL.COLO4_09796 Corchorus olitorius HOM05D000913 ORTHO05D000687 8.8e-08 60.1 72 44.4
Duzib213G0455 Durio zibethinus HOM05D000913 ORTHO05D000687 8.8e-08 60.1 72 41.7
Glyma.09G016400 Glycine max HOM05D000913 ORTHO05D000687 8.8e-08 60.1 73 41.1
Gorai.009G452700 Gossypium raimondii HOM05D000913 ORTHO05D000687 8.8e-08 60.1 72 36.1
Nitab4.5_0000163g0290 Nicotiana tabacum HOM05D000913 ORTHO05D000687 8.8e-08 60.1 72 51.4
Thecc.07G019700 Theobroma cacao HOM05D000913 ORTHO05D000687 8.8e-08 60.1 72 45.8
Ah.12g065180 Amaranthus hybridus HOM05D000913 ORTHO05D000687 1.1e-07 59.7 72 41.7
Gohir.D05G378800 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.1e-07 59.7 72 43.1
Gorai.N012600 Gossypium raimondii HOM05D000913 ORTHO05D000687 1.1e-07 59.7 72 43.1
Potri.006G001900 Populus trichocarpa HOM05D000913 ORTHO05D000687 1.1e-07 59.7 76 40.8
Sopen12g007560 Solanum pennellii HOM05D000913 ORTHO05D000687 1.1e-07 59.7 72 51.4
GSVIVG01014798001 Vitis vinifera HOM05D000913 ORTHO05D000687 1.1e-07 59.7 72 40.3
FAN11G2899 Fragaria x ananassa HOM05D009841 ORTHO05D012869 1.5e-07 59.3 72 44.4
Gohir.A04G003500 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.5e-07 59.3 72 34.7
MD10G1233300 Malus domestica HOM05D000913 ORTHO05D000687 1.5e-07 59.3 73 45.2
CiPaw.11G201200 Carya illinoinensis HOM05D000913 ORTHO05D000687 2.0e-07 58.9 63 50.8
Duzib268G0517 Durio zibethinus HOM05D000913 ORTHO05D000687 2.0e-07 58.9 67 47.8
Potri.001G468500 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.0e-07 58.9 72 45.8
Potri.006G001800 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.0e-07 58.9 74 40.5
Sabra06G0001900 Salix brachista HOM05D000913 ORTHO05D000687 2.0e-07 58.9 73 46.6
Lj6g0007781 Lotus japonicus HOM05D000913 ORTHO05D000687 2.6e-07 58.5 63 42.9
MD11G1204400 Malus domestica HOM05D000913 ORTHO05D000687 2.6e-07 58.5 72 44.4
Phvul.008G216200 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 2.6e-07 58.5 72 40.3
arahy.Tifrunner.gnm1.ann1.RGK4QC Arachis hypogaea HOM05D000913 ORTHO05D000687 3.3e-07 58.2 73 42.5
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 3.3e-07 58.2 63 42.9
Dinv10316 Davidia involucrata HOM05D000913 ORTHO05D000687 3.3e-07 58.2 62 48.4
Gohir.A04G003600 Gossypium hirsutum HOM05D000913 ORTHO05D000687 3.3e-07 58.2 72 34.7
Gohir.D05G386200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 3.3e-07 58.2 72 34.7
MD03G1038100 Malus domestica HOM05D000913 ORTHO05D000687 4.4e-07 57.8 63 42.9
Medtr2g027600 Medicago truncatula HOM05D000913 ORTHO05D000687 4.4e-07 57.8 63 42.9
Thecc.07G006200 Theobroma cacao HOM05D000913 ORTHO05D000687 4.4e-07 57.8 72 43.1
Cfa016930 Carpinus fangiana HOM05D000913 ORTHO05D000687 5.7e-07 57.4 72 38.9
DCAR_016629 Daucus carota HOM05D000913 ORTHO05D000687 5.7e-07 57.4 63 46.0
FAN16G2117 Fragaria x ananassa HOM05D000913 ORTHO05D000687 5.7e-07 57.4 70 44.3
Gohir.A04G008700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 5.7e-07 57.4 72 40.3
Actinidia05030 Actinidia chinensis HOM05D000913 ORTHO05D000687 7.4e-07 57.0 63 47.6
arahy.Tifrunner.gnm1.ann1.29G5I6 Arachis hypogaea HOM05D000913 ORTHO05D000687 7.4e-07 57.0 72 36.1
Glyma.15G122200 Glycine max HOM05D000913 ORTHO05D000687 7.4e-07 57.0 73 38.4
QL05p066539 Quercus lobata HOM05D000913 ORTHO05D000687 7.4e-07 57.0 71 42.3
TPR.G10472 Trifolium pratense HOM05D000913 ORTHO05D000687 7.4e-07 57.0 63 44.4
Atru.chr2.3866 Acer truncatum HOM05D000913 ORTHO05D000687 9.7e-07 56.6 73 37.0
Gorai.009G452900 Gossypium raimondii HOM05D000913 ORTHO05D000687 9.7e-07 56.6 72 34.7
Phvul.006G135600 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 9.7e-07 56.6 63 44.4
Prupe.6G030200 Prunus persica HOM05D000913 ORTHO05D000687 9.7e-07 56.6 72 40.3
QL05p066543 Quercus lobata HOM05D000913 ORTHO05D000687 9.7e-07 56.6 73 41.1
RcHm_v2.0_Chr5g0042661 Rosa chinensis HOM05D000913 ORTHO05D000687 9.7e-07 56.6 72 41.7
Cpa.g.sc12.95 Carica papaya HOM05D000913 ORTHO05D000687 1.3e-06 56.2 72 36.1
Duzib150G0569 Durio zibethinus HOM05D000913 ORTHO05D000687 1.3e-06 56.2 73 37.0
Hma1.2p1_0193F.1_g084060 Hydrangea macrophylla HOM05D000913 ORTHO05D000687 1.3e-06 56.2 53 49.1
MD03G1038400 Malus domestica HOM05D000913 ORTHO05D000687 1.3e-06 56.2 71 40.8
Zm00001eb245480 Zea mays HOM05D000913 ORTHO05D000687 1.3e-06 56.2 75 40.0
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.7e-06 55.8 72 40.3
Manes.11G055424 Manihot esculenta HOM05D000913 ORTHO05D000687 1.7e-06 55.8 63 47.6
Manes.11G060024 Manihot esculenta HOM05D000913 ORTHO05D000687 1.7e-06 55.8 63 47.6
Nn5g28780 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.7e-06 55.8 63 44.4
Phvul.008G282300 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 1.7e-06 55.8 72 44.4
EL10Ac2g02868 Beta vulgaris HOM05D000913 ORTHO05D000687 2.2e-06 55.5 63 39.7
Ciclev10010525m.g Citrus clementina HOM05D000913 ORTHO05D000687 2.2e-06 55.5 61 42.6
Eucgr.E04208 Eucalyptus grandis HOM05D000913 ORTHO05D000687 2.2e-06 55.5 62 48.4
Medtr0635s0010 Medicago truncatula HOM05D000913 ORTHO05D000687 2.2e-06 55.5 61 42.6
Thecc.09G251800 Theobroma cacao HOM05D000913 ORTHO05D000687 2.2e-06 55.5 73 37.0
AT3G20180 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 2.8e-06 55.1 72 38.9
CSS0020217 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 2.8e-06 55.1 67 38.8
Prupe.4G234800 Prunus persica HOM05D000913 ORTHO05D000687 2.8e-06 55.1 72 41.7
arahy.Tifrunner.gnm1.ann1.HRA598 Arachis hypogaea HOM05D000913 ORTHO05D000687 3.7e-06 54.7 72 34.7
CSS0038172 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 3.7e-06 54.7 71 36.6
FvH4_3g24100 Fragaria vesca HOM05D000913 ORTHO05D000687 3.7e-06 54.7 72 41.7
Prupe.2G123900 Prunus persica HOM05D000913 ORTHO05D000687 3.7e-06 54.7 72 40.3
vmacro11625 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 3.7e-06 54.7 71 40.8
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 4.8e-06 54.3 63 42.9
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 6.3e-06 53.9 61 42.6
Prupe.6G030300 Prunus persica HOM05D000913 ORTHO05D000687 6.3e-06 53.9 63 41.3
QL08p001958 Quercus lobata HOM05D000913 ORTHO05D000687 6.3e-06 53.9 72 41.7
RcHm_v2.0_Chr5g0000231 Rosa chinensis HOM05D000913 ORTHO05D000687 6.3e-06 53.9 73 41.1
Atru.chr1.4053 Acer truncatum HOM05D000913 ORTHO05D000687 8.2e-06 53.5 59 39.0
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 8.2e-06 53.5 72 38.9
CiPaw.14G082800 Carya illinoinensis HOM05D000913 ORTHO05D000687 8.2e-06 53.5 72 38.9
FvH4_3g24080 Fragaria vesca HOM05D000913 ORTHO05D000687 8.2e-06 53.5 76 42.1
Manes.11G060239 Manihot esculenta HOM05D000913 ORTHO05D000687 8.2e-06 53.5 61 47.5
Potri.001G378700 Populus trichocarpa HOM05D000913 ORTHO05D000687 8.2e-06 53.5 72 44.4
QL05p005810 Quercus lobata HOM05D000913 ORTHO05D000687 8.2e-06 53.5 73 39.7
Sc11g0006750 Simmondsia chinensis HOM05D000913 ORTHO05D000687 8.2e-06 53.5 71 42.3
VMungo0540G1757 Vigna mungo HOM05D002133 ORTHO05D000687 8.2e-06 53.5 63 41.3


User provided reference genes

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