Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 6.5e-41 170.2 83 100.0
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.3e-36 156.0 79 93.7
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.7e-25 119.0 85 69.4
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 1.1e-24 116.3 84 66.7
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 4.2e-24 114.4 85 67.1
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 1.7e-17 92.4 79 62.0
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.7e-17 92.4 76 59.2
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 2.9e-17 91.7 83 54.2
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 5.0e-17 90.9 89 55.1
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 4.2e-16 87.8 75 56.0
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 5.5e-16 87.4 92 53.3
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 2.1e-15 85.5 70 58.6
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.6e-15 84.7 87 54.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 3.6e-15 84.7 82 54.9
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 4.7e-15 84.3 74 56.8
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 6.1e-15 84.0 77 51.9
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 6.1e-15 84.0 86 54.7
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 8.0e-15 83.6 75 53.3
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.0e-14 83.2 91 53.8
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.0e-14 83.2 74 58.1
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 2.3e-14 82.0 75 56.0
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.0e-14 81.6 81 51.9
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 4.0e-14 81.3 87 52.9
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 8.8e-14 80.1 88 50.0
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.6e-13 78.6 76 55.3
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.4e-13 77.8 75 52.0
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 4.4e-13 77.8 82 41.5
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.4e-13 77.8 82 39.0
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.5e-13 77.0 83 51.8
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 9.8e-13 76.6 75 52.0
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 9.8e-13 76.6 82 42.7
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.8e-12 75.1 82 36.6
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 6.3e-12 73.9 80 50.0
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.3e-12 73.9 76 53.9
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 8.3e-12 73.6 73 46.6
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 8.3e-12 73.6 82 51.2
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.1e-11 71.6 87 32.2
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.1e-11 71.2 90 46.7
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 5.4e-11 70.9 90 47.8
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 7.0e-11 70.5 77 44.2
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 7.0e-11 70.5 73 49.3
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 7.0e-11 70.5 75 44.0
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.2e-10 69.7 85 48.2
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.0e-10 68.9 87 44.8
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 2.0e-10 68.9 77 46.8
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 2.7e-10 68.6 84 40.5
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.5e-10 68.2 83 42.2
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 7.7e-10 67.0 85 47.1
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.0e-09 66.6 75 46.7
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 2.9e-09 65.1 94 42.6
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.8e-09 64.7 99 39.4
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 6.5e-09 63.9 78 41.0
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 8.5e-09 63.5 59 44.1
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 1.1e-08 63.2 64 43.8
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.5e-08 62.8 86 41.9
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.9e-08 62.4 80 38.8
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.9e-08 62.4 91 37.4
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.9e-08 62.4 82 39.0
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.2e-08 61.6 85 38.8
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 4.2e-08 61.2 85 41.2
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.2e-08 61.2 82 37.8
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.2e-08 61.2 82 37.8
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 4.2e-08 61.2 93 43.0
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 5.5e-08 60.8 85 37.6
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 5.5e-08 60.8 46 63.0
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.5e-08 60.8 85 38.8
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 9.4e-08 60.1 85 37.6
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 9.4e-08 60.1 86 38.4
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 1.2e-07 59.7 80 43.8
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.2e-07 59.7 90 40.0
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 1.6e-07 59.3 46 63.0
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.6e-07 59.3 77 39.0
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.6e-07 59.3 86 39.5
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.6e-07 59.3 80 42.5
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.6e-07 59.3 78 35.9
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.6e-07 59.3 78 35.9
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.1e-07 58.9 94 33.0
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.7e-07 58.5 98 34.7
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 3.6e-07 58.2 82 40.2
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 6.1e-07 57.4 96 38.5
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 6.1e-07 57.4 69 44.9
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 6.1e-07 57.4 76 38.2
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 8.0e-07 57.0 95 37.9
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 8.0e-07 57.0 79 36.7
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 1.4e-06 56.2 72 38.9
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 1.4e-06 56.2 72 38.9
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 1.4e-06 56.2 78 39.7
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 1.8e-06 55.8 86 39.5
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.8e-06 55.8 70 44.3
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 2.3e-06 55.5 94 34.0
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 2.3e-06 55.5 72 36.1
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.0e-06 55.1 61 42.6
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 3.0e-06 55.1 72 37.5
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 3.0e-06 55.1 72 37.5
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 3.0e-06 55.1 72 37.5
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 3.0e-06 55.1 72 37.5
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 3.0e-06 55.1 72 37.5
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 3.0e-06 55.1 85 38.8
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 4.0e-06 54.7 90 34.4
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 5.2e-06 54.3 74 40.5
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 5.2e-06 54.3 77 41.6
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 5.2e-06 54.3 77 41.6
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 6.8e-06 53.9 78 33.3
Hma1.2p1_0066F.1_g036560 Hydrangea macrophylla HOM05D007556 ORTHO05D002252 8.8e-06 53.5 84 35.7
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 8.8e-06 53.5 73 41.1
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 8.8e-06 53.5 99 31.3


User provided reference genes

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