Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.6e-203 712.6 379 100.0
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.9e-152 542.3 378 79.4
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 5.4e-151 538.1 373 79.6
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 2.7e-150 535.8 377 77.7
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.9e-143 513.1 367 77.1
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 2.4e-143 512.7 379 76.5
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 3.8e-136 488.8 382 72.0
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 5.3e-130 468.4 327 75.8
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.0e-130 467.6 324 76.5
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 4.5e-129 465.3 348 72.4
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 6.4e-128 461.5 352 71.3
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.1e-127 460.7 317 78.2
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.1e-127 460.7 368 68.5
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.4e-127 460.3 332 75.3
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.9e-127 459.9 344 73.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.4e-127 459.5 353 72.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 2.4e-127 459.5 327 75.5
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 2.4e-127 459.5 327 76.1
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 2.4e-127 459.5 321 77.9
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 4.2e-127 458.8 356 70.8
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 5.4e-127 458.4 348 73.9
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 5.4e-127 458.4 331 75.8
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.2e-126 457.2 359 71.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.2e-126 457.2 327 75.8
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.6e-126 456.8 373 68.6
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.7e-126 456.1 327 75.8
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 4.6e-126 455.3 344 72.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 4.6e-126 455.3 327 75.5
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.0e-126 454.9 348 73.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 7.9e-126 454.5 327 75.2
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 7.9e-126 454.5 342 73.1
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 7.9e-126 454.5 363 70.5
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.8e-125 453.4 324 75.9
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.8e-125 453.4 365 70.7
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.8e-125 453.4 347 72.6
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.8e-125 453.4 365 69.9
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.9e-125 452.2 344 72.1
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.7e-125 451.4 345 73.9
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 8.7e-125 451.1 327 72.2
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-124 450.7 350 72.6
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.5e-124 450.3 363 70.8
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 3.3e-124 449.1 346 70.2
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 5.6e-124 448.4 327 75.2
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 7.4e-124 448.0 368 68.2
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.8e-123 446.0 336 73.5
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.8e-123 446.0 362 69.1
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.7e-123 445.7 340 70.9
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 3.7e-123 445.7 327 74.6
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 4.8e-123 445.3 363 69.7
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 8.1e-123 444.5 362 67.7
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.4e-122 443.7 351 70.4
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.2e-121 440.7 359 69.4
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.5e-121 440.3 327 73.1
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 2.6e-121 439.5 327 72.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 3.4e-121 439.1 322 74.8
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 3.4e-121 439.1 324 73.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 5.8e-121 438.3 330 72.7
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 9.9e-121 437.6 354 69.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 3.8e-120 435.6 326 73.9
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 8.4e-120 434.5 327 72.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 8.4e-120 434.5 324 72.2
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.1e-119 434.1 340 67.1
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.9e-119 433.3 362 67.1
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.9e-119 433.3 328 72.0
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.9e-119 433.3 324 71.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.9e-119 433.3 324 71.9
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.4e-119 433.0 345 66.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 3.2e-119 432.6 326 72.4
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 3.2e-119 432.6 362 66.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 4.2e-119 432.2 353 68.3
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 5.5e-119 431.8 362 67.4
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 7.1e-119 431.4 331 71.6
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 7.1e-119 431.4 343 68.5
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.2e-118 430.6 353 68.0
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-118 429.9 359 67.4
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 2.1e-118 429.9 359 67.4
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 2.1e-118 429.9 370 66.2
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 2.7e-118 429.5 326 71.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.7e-118 429.5 327 70.6
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-118 428.7 372 66.4
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 4.6e-118 428.7 327 70.3
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 6.0e-118 428.3 326 71.8
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 6.0e-118 428.3 370 65.9
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.9e-118 427.9 371 66.0
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.9e-118 427.9 371 66.0
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-117 426.8 372 65.6
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.8e-117 426.8 324 70.4
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.8e-117 426.8 370 65.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 2.3e-117 426.4 370 64.9
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 2.3e-117 426.4 370 64.9
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.0e-117 426.0 370 65.4
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 5.1e-117 425.2 362 66.9
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 6.7e-117 424.9 370 65.1
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 8.7e-117 424.5 353 66.9
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 8.7e-117 424.5 353 66.9
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 8.7e-117 424.5 357 66.4
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.1e-116 424.1 349 68.2
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 3.3e-116 422.5 346 67.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 4.3e-116 422.2 370 65.1
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.3e-115 420.6 346 67.1
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.1e-115 419.9 319 72.1
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 2.8e-115 419.5 364 60.4
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 8.2e-115 417.9 327 67.9
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.0e-112 411.0 360 65.6
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.0e-112 411.0 339 68.1
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.9e-112 409.5 315 70.5
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.4e-111 407.1 312 71.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.9e-111 406.8 325 67.1
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.9e-108 396.7 353 61.2
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.7e-108 395.2 305 70.2
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.6e-107 393.7 340 66.2
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 2.8e-107 392.9 305 69.8
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 4.8e-107 392.1 305 69.8
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 4.8e-107 392.1 327 67.3
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 6.3e-107 391.7 363 62.3
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 6.7e-101 371.7 349 60.5
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.3e-100 369.4 319 61.4
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-98 362.1 323 64.7
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 3.4e-97 359.4 355 58.0
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.2e-94 350.9 328 62.5
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.6e-94 350.5 330 59.4
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.0e-93 346.3 353 56.9
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.9e-93 345.9 365 59.2
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 7.4e-92 341.7 299 66.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 9.4e-87 324.7 339 55.2
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 5.7e-84 315.5 245 70.6
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.7e-84 315.5 297 55.6
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 9.7e-84 314.7 302 62.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 8.2e-83 311.6 242 71.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.8e-80 302.8 316 56.0
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 5.0e-80 302.4 204 72.5
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.2e-78 297.7 321 53.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.3e-75 287.7 365 50.7
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.9e-72 276.6 336 52.4
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.0e-66 255.4 234 58.5
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.4e-53 214.5 208 56.7
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.2e-53 212.6 233 50.6
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.4e-45 188.0 165 58.8
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 4.1e-42 176.4 129 70.5
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 3.1e-37 160.2 128 66.4
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.7e-35 154.5 104 73.1
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.1e-34 151.8 166 53.0
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 2.8e-30 137.1 94 70.2
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 4.7e-30 136.3 97 69.1
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 2.9e-27 127.1 90 67.8
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 4.3e-23 113.2 285 33.0
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 9.6e-23 112.1 128 50.8
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-21 108.6 78 69.2
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 3.8e-19 100.1 113 48.7
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.4e-18 98.2 80 58.8
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 3.5e-17 93.6 116 45.7
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.8e-17 92.4 136 40.4
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.3e-14 85.1 272 30.5
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-14 83.6 58 69.0
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-13 82.0 65 63.1
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 2.4e-13 80.9 137 40.1
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 5.4e-10 69.7 152 34.2
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 2.7e-09 67.4 56 62.5
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.8e-08 64.7 67 52.2
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.7e-08 62.8 51 56.9
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.3e-07 60.1 50 58.0
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.6e-07 59.7 50 54.0
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.4e-07 59.3 78 47.4
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.4e-07 59.3 78 47.4
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 9.6e-07 58.9 63 52.4
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-06 58.2 43 62.8
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.8e-06 57.4 43 62.8


User provided reference genes

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