Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.1e-201 706.4 379 100.0
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.4e-159 566.6 370 83.5
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 8.1e-155 550.8 378 81.0
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.2e-150 537.0 377 77.7
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 3.0e-141 505.8 377 76.9
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 2.8e-139 499.2 345 79.7
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.5e-132 476.9 342 78.1
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 7.3e-132 474.6 360 73.1
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.8e-131 472.6 365 71.2
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 6.4e-128 461.5 357 73.7
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 6.4e-128 461.5 322 80.4
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.4e-127 460.3 360 71.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.9e-127 459.9 343 74.1
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 7.1e-127 458.0 356 71.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.2e-126 457.2 343 73.5
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.5e-126 455.7 324 77.8
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.0e-125 454.1 344 73.3
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 3.9e-125 452.2 360 71.1
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 5.1e-125 451.8 331 75.8
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 6.7e-125 451.4 359 71.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 8.7e-125 451.1 359 73.0
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.1e-124 450.7 360 70.0
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.1e-124 450.7 361 72.0
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.5e-124 450.3 337 74.2
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.9e-124 449.9 362 70.7
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.9e-124 449.9 359 70.5
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 3.3e-124 449.1 340 72.4
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 4.3e-124 448.7 355 71.0
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 4.3e-124 448.7 370 70.8
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.6e-124 447.6 370 69.7
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 9.6e-124 447.6 374 67.6
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.3e-123 447.2 370 69.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.1e-123 446.4 382 67.3
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.8e-123 446.0 367 70.6
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.7e-123 445.7 327 75.5
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 3.7e-123 445.7 327 75.5
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 4.8e-123 445.3 327 76.8
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 8.1e-123 444.5 374 70.6
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.4e-122 443.7 353 72.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.8e-122 443.4 327 75.2
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.8e-122 443.4 334 75.4
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.1e-122 442.6 334 74.0
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 5.3e-122 441.8 362 69.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 5.3e-122 441.8 363 70.2
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 5.3e-122 441.8 334 73.4
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 9.0e-122 441.0 322 76.4
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.0e-122 441.0 331 73.7
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.0e-122 441.0 327 75.2
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-121 440.3 367 69.8
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.5e-121 440.3 332 74.1
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.5e-121 440.3 363 69.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.5e-121 440.3 378 69.8
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.5e-121 440.3 370 67.0
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.0e-121 439.9 369 70.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.4e-121 439.1 324 74.7
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 7.6e-121 438.0 324 74.4
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 7.6e-121 438.0 324 74.4
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.8e-120 435.6 349 70.2
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 4.9e-120 435.3 356 68.5
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.9e-119 433.3 336 71.1
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.4e-119 433.0 349 73.1
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.4e-119 433.0 328 73.2
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.2e-119 432.2 334 72.2
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 7.1e-119 431.4 336 70.5
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.6e-118 428.7 330 73.0
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 7.9e-118 427.9 331 71.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.3e-117 427.2 358 68.4
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.3e-117 427.2 324 72.2
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.3e-117 427.2 361 69.0
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.3e-117 427.2 357 67.5
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.9e-117 425.6 331 71.3
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 3.9e-117 425.6 379 65.7
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 6.7e-117 424.9 368 66.3
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 8.7e-117 424.5 330 71.5
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.1e-116 424.1 331 71.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.1e-116 424.1 327 68.8
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.9e-116 423.3 359 68.0
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.9e-116 423.3 359 68.0
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.9e-116 423.3 339 69.9
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.3e-116 422.5 377 65.8
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-116 422.5 359 67.7
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 4.3e-116 422.2 363 67.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 4.3e-116 422.2 368 66.0
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 4.3e-116 422.2 368 66.0
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 4.3e-116 422.2 363 67.2
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 5.6e-116 421.8 375 65.6
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 5.6e-116 421.8 332 68.1
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 5.6e-116 421.8 330 71.2
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 7.4e-116 421.4 331 70.7
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 9.6e-116 421.0 377 65.5
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 9.6e-116 421.0 337 72.1
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.3e-115 420.6 331 70.4
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-115 419.9 331 71.0
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 3.7e-115 419.1 351 66.4
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.2e-115 418.3 315 74.0
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 8.2e-115 417.9 363 66.4
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.8e-114 416.8 363 66.1
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.4e-114 416.4 348 66.7
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 2.4e-114 416.4 335 64.2
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.1e-114 416.0 312 74.7
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 5.3e-114 415.2 319 72.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 6.9e-114 414.8 331 69.2
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 6.9e-114 414.8 363 65.6
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 6.9e-114 414.8 363 65.6
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 9.0e-114 414.5 363 66.1
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.1e-111 407.5 360 65.8
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.4e-111 407.1 346 65.6
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.1e-110 403.3 310 73.2
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.9e-109 399.1 305 71.1
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.1e-108 397.5 329 68.1
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.5e-108 397.1 331 65.3
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.9e-108 396.7 305 70.8
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.5e-108 396.4 305 70.8
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 5.3e-106 388.7 360 63.1
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.9e-104 382.9 327 66.4
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.3e-100 369.0 319 62.4
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 9.7e-100 367.9 371 58.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-97 359.0 315 67.3
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.2e-94 350.9 332 63.6
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 3.6e-94 349.4 334 59.3
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.5e-92 344.0 330 58.5
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 4.4e-92 342.4 345 61.4
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.2e-91 340.1 380 54.7
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 3.4e-89 332.8 291 67.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 8.5e-88 328.2 339 55.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.4e-85 320.9 245 72.7
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 3.9e-85 319.3 248 72.2
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 8.2e-83 311.6 204 74.5
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.4e-82 310.1 299 56.9
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 7.2e-79 298.5 243 70.0
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.4e-77 294.3 317 54.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.8e-77 293.9 321 53.9
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.7e-75 287.3 324 54.9
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.6e-73 280.8 331 54.4
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.7e-67 259.6 238 59.2
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 7.0e-58 228.8 209 62.2
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.6e-52 210.3 208 54.3
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.6e-46 191.0 165 58.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 4.9e-43 179.5 129 72.9
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.5e-36 157.9 166 55.4
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 6.0e-33 146.0 150 56.7
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 5.6e-31 139.4 94 72.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 8.1e-30 135.6 102 68.6
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.4e-26 124.8 97 68.0
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 5.1e-24 116.3 128 52.3
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 6.6e-24 115.9 97 61.9
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-22 111.3 78 73.1
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.2e-18 96.7 108 49.1
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.1e-17 94.4 122 47.5
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 3.5e-17 93.6 83 56.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 3.5e-17 93.6 100 47.0
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 9.6e-15 85.5 65 67.7
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.3e-14 85.1 92 51.1
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 4.8e-14 83.2 163 37.4
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 6.9e-13 79.3 274 32.1
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-12 76.6 63 58.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 9.3e-10 68.9 176 34.1
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 6.0e-09 66.2 56 60.7
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-08 64.3 49 59.2
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 6.7e-08 62.8 63 55.6
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.1e-07 62.0 47 61.7
Ca_29028_v3 Cicer arietinum L. HOM05D020748 ORTHO05D028602 5.6e-07 59.7 120 33.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 9.6e-07 58.9 43 65.1
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.6e-07 58.9 48 60.4
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-06 57.4 43 62.8
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.8e-06 56.6 48 58.3


User provided reference genes

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