Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.6e-54 215.3 121 100.0
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 5.2e-47 191.0 119 89.9
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 3.1e-44 181.8 119 84.0
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.2e-43 179.9 119 82.4
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 3.5e-43 178.3 119 80.7
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.8e-42 174.9 119 79.8
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.5e-41 172.2 119 80.7
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.5e-41 172.2 119 79.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.2e-40 169.9 119 79.8
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-40 169.5 119 79.0
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.1e-40 169.1 119 79.0
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 8.0e-40 167.2 119 78.2
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-39 166.0 119 77.3
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 6.8e-39 164.1 119 74.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.8e-39 164.1 119 76.5
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 6.8e-39 164.1 119 76.5
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 6.8e-39 164.1 119 73.9
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.3e-37 159.8 119 74.8
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.7e-37 159.5 119 73.9
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 3.7e-37 158.3 119 69.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-36 156.8 119 70.6
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.1e-36 156.8 119 70.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.4e-36 156.4 119 72.3
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.4e-36 155.6 119 71.4
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.4e-36 155.6 119 70.6
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.4e-36 155.6 119 69.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 7.0e-36 154.1 119 75.6
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 7.0e-36 154.1 119 68.1
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 7.0e-36 154.1 119 69.7
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.2e-35 153.3 119 68.9
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.2e-35 153.3 119 70.6
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 1.2e-35 153.3 119 70.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.0e-35 152.5 119 68.1
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 2.7e-35 152.1 119 73.9
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 4.5e-35 151.4 119 68.1
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.7e-34 149.4 119 70.6
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.7e-34 149.4 119 69.7
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.3e-34 149.1 119 69.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.3e-34 149.1 119 68.1
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.9e-34 148.7 119 69.7
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 2.9e-34 148.7 119 69.7
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 5.0e-34 147.9 119 69.7
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 8.6e-34 147.1 119 67.2
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.1e-33 146.7 114 70.2
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.1e-33 146.7 119 68.9
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-33 146.7 118 66.9
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.1e-33 146.7 119 68.1
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.5e-33 146.4 119 73.9
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.9e-33 146.0 119 68.1
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.3e-33 145.2 119 65.5
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 9.5e-33 143.7 119 66.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.1e-32 142.5 119 68.9
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.1e-32 142.5 119 68.9
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.8e-32 142.1 119 65.5
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 6.1e-32 141.0 120 65.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 6.1e-32 141.0 120 65.0
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-31 139.0 119 67.2
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.0e-31 138.7 119 67.2
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 5.2e-31 137.9 120 63.3
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 5.2e-31 137.9 119 63.9
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 6.8e-31 137.5 120 64.2
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 8.9e-31 137.1 120 63.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.6e-30 135.6 119 62.2
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 3.4e-30 135.2 119 62.2
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.4e-30 134.8 119 58.8
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 5.7e-30 134.4 119 61.3
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 5.7e-30 134.4 119 64.7
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 7.5e-30 134.0 118 66.1
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.3e-29 133.3 120 62.5
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.7e-29 132.9 119 60.5
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 4.9e-29 131.3 119 59.7
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.1e-28 130.2 112 63.4
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.8e-28 129.4 119 61.3
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.8e-28 129.4 119 63.0
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 4.1e-28 128.3 124 59.7
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.6e-27 126.3 119 60.5
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.7e-27 125.6 119 59.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.7e-27 125.6 91 78.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 2.7e-27 125.6 111 64.0
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-27 125.2 91 76.9
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.5e-27 125.2 119 58.0
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.6e-27 124.8 119 58.0
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-26 123.6 90 76.7
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-26 123.6 90 76.7
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-26 123.6 90 76.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 2.3e-26 122.5 119 58.8
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 6.6e-26 120.9 90 75.6
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.1e-25 120.2 119 58.8
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.1e-25 120.2 119 58.8
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.9e-25 119.4 119 58.0
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.9e-25 119.4 119 58.0
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.5e-25 119.0 90 74.4
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.3e-25 118.2 119 57.1
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.3e-25 118.2 119 57.1
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.3e-25 118.2 119 57.1
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 4.3e-25 118.2 119 57.1
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 5.6e-25 117.9 119 58.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 5.6e-25 117.9 119 58.0
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-24 116.7 119 58.8
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.6e-24 116.3 119 56.3
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.6e-24 116.3 119 56.3
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.0e-24 114.0 119 58.8
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.0e-23 113.6 119 56.3
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.8e-23 112.8 119 54.6
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.3e-23 112.5 119 58.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.0e-23 111.7 119 53.8
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 4.4e-22 108.2 119 49.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 2.9e-21 105.5 119 50.4
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.4e-20 102.4 119 51.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.4e-20 102.4 119 51.3
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.1e-20 101.7 79 70.9
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 9.2e-20 100.5 119 52.1
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 6.0e-19 97.8 119 51.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.7e-18 96.3 119 50.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 6.6e-18 94.4 119 50.4
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.3e-17 91.7 103 56.3
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 5.6e-17 91.3 107 45.8
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-15 87.0 103 55.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.8e-15 84.3 119 47.9
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 7.5e-14 80.9 89 52.8
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 9.8e-14 80.5 86 53.5
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.7e-13 79.7 57 77.2
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.4e-12 76.6 62 69.4
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.0e-11 71.2 60 65.0
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.1e-10 68.2 99 54.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.1e-10 68.2 99 54.5
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.2e-08 61.2 70 60.0
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 1.5e-06 56.6 77 45.5
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 2.0e-06 56.2 50 62.0
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 2.6e-06 55.8 46 58.7


User provided reference genes

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