Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 5.8e-228 793.9 403 100.0
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.3e-187 659.8 421 81.5
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 9.7e-183 643.7 411 82.0
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 5.5e-178 627.9 371 87.3
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 5.5e-162 574.7 339 86.4
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 2.1e-161 572.8 337 85.8
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 3.6e-161 572.0 346 84.1
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 4.0e-160 568.5 356 82.9
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 6.8e-160 567.8 408 73.8
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 9.8e-159 563.9 336 85.1
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 5.9e-156 554.7 405 72.6
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.1e-154 550.4 368 76.1
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.5e-154 549.3 343 79.6
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.2e-153 547.0 383 74.7
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.6e-153 546.6 337 80.4
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.5e-151 540.0 385 71.4
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.6e-151 539.3 355 76.6
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-150 536.2 360 75.8
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 2.9e-150 535.8 324 80.9
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 4.9e-150 535.0 356 74.7
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 1.8e-149 533.1 326 81.6
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 2.4e-149 532.7 328 80.2
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.1e-149 531.9 376 72.9
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.2e-148 530.4 403 68.5
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.6e-148 528.5 375 72.3
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 5.9e-148 528.1 333 77.2
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.7e-147 526.6 422 65.9
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 8.6e-147 524.2 319 79.9
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.9e-146 523.1 408 65.9
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 4.3e-146 521.9 392 68.6
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 4.3e-146 521.9 346 74.6
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.2e-145 520.4 394 68.0
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 6.2e-145 518.1 338 76.0
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 8.0e-145 517.7 408 66.4
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.0e-144 517.3 364 72.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.0e-144 517.3 339 74.9
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.4e-144 516.9 324 77.8
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 3.1e-144 515.8 340 75.0
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 4.0e-144 515.4 375 69.6
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 5.2e-144 515.0 373 68.9
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 8.9e-144 514.2 348 75.3
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 8.9e-144 514.2 348 75.3
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 1.2e-143 513.8 410 66.8
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.5e-143 513.5 377 68.2
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.5e-143 513.5 336 76.5
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 4.4e-143 511.9 399 67.2
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.2e-142 509.6 353 71.1
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 7.0e-141 504.6 328 77.1
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 9.2e-141 504.2 340 72.1
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 7.8e-140 501.1 379 67.5
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.0e-139 500.7 342 71.3
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.3e-139 500.4 373 70.2
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.3e-139 500.4 341 73.0
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.3e-139 499.6 377 68.7
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.0e-139 498.4 349 71.1
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.5e-138 496.9 321 72.6
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 7.3e-138 494.6 406 63.1
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.1e-136 490.7 365 68.2
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.1e-136 490.7 336 71.1
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.4e-136 490.3 324 74.7
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 4.0e-136 488.8 361 69.0
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 8.9e-136 487.6 368 66.8
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 8.9e-136 487.6 368 66.8
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 8.9e-136 487.6 458 58.1
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 5.8e-135 485.0 341 71.3
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 9.8e-135 484.2 322 73.3
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 4.9e-134 481.9 335 69.9
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 6.4e-134 481.5 363 65.8
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.9e-133 479.9 364 68.1
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.9e-133 479.9 334 70.7
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.4e-133 479.6 360 67.5
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.4e-133 479.6 334 70.1
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 3.2e-133 479.2 290 79.0
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 9.2e-133 477.6 320 72.2
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 4.6e-132 475.3 334 68.9
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.0e-132 474.9 341 67.7
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 6.0e-132 474.9 323 71.8
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.7e-131 473.4 356 66.3
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.7e-131 473.4 341 67.4
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.1e-130 470.7 533 52.3
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 1.8e-128 463.4 333 70.0
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 4.4e-127 458.8 344 67.7
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 6.4e-126 454.9 319 69.6
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.4e-125 453.8 322 70.2
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 4.1e-125 452.2 322 69.9
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 7.1e-125 451.4 323 69.0
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 7.1e-125 451.4 323 69.0
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.6e-124 450.3 342 67.0
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 6.0e-124 448.4 323 68.1
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 1.7e-123 446.8 454 56.6
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 3.9e-123 445.7 319 68.3
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 8.6e-123 444.5 362 64.4
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 1.9e-122 443.4 340 66.8
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 2.5e-122 443.0 322 69.9
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 5.6e-122 441.8 332 65.1
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.2e-119 434.1 317 68.1
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 7.6e-119 431.4 333 66.4
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 9.9e-119 431.0 226 91.6
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 2.2e-118 429.9 328 65.2
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 2.7e-116 422.9 382 58.1
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 7.3e-114 414.8 288 71.2
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 4.8e-113 412.1 354 61.3
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 4.5e-111 405.6 272 74.6
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 9.9e-111 404.4 276 69.6
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.1e-109 401.0 297 67.3
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.8e-107 393.7 228 82.9
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.1e-106 391.0 286 65.7
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 8.1e-105 384.8 216 82.4
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 2.4e-101 373.2 268 67.2
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 1.1e-98 364.4 323 60.7
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.3e-97 360.9 276 65.2
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 8.2e-97 358.2 282 69.1
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 4.5e-95 352.4 546 40.3
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 3.8e-94 349.4 258 64.0
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 8.4e-94 348.2 230 77.0
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 2.1e-92 343.6 269 69.9
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 6.7e-91 338.6 198 79.3
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.7e-84 316.6 216 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-83 313.5 269 58.0
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.2e-79 301.2 215 67.0
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.7e-78 297.4 328 52.7
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 4.8e-73 279.3 232 60.8
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 1.4e-72 277.7 204 71.6
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 8.9e-43 178.7 254 41.3
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.3e-41 174.9 262 38.2
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 7.3e-29 132.5 286 32.5
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 8.9e-27 125.6 109 63.3
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 1.2e-26 125.2 172 50.6
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.8e-26 122.9 119 53.8
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 3.7e-25 120.2 175 45.7
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.3e-25 119.0 100 64.0
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.9e-24 117.9 130 50.0
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.9e-24 117.9 176 40.3
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.4e-24 117.5 103 61.2
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 4.1e-24 116.7 178 44.9
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 5.4e-24 116.3 89 67.4
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.5e-23 113.6 74 75.7
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.5e-23 113.6 74 75.7
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-22 111.3 66 77.3
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-22 111.3 66 77.3
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.3e-21 107.1 66 74.2
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 4.6e-15 86.7 234 29.1
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.3e-14 85.1 49 85.7
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 4.7e-12 76.6 170 35.3
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 8.1e-12 75.9 166 31.3
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 3.4e-10 70.5 170 31.2
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 1.1e-08 65.5 190 33.7
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.6e-07 61.6 62 51.6


User provided reference genes

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