Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 7.0e-121 437.6 267 100.0
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 2.4e-65 253.1 260 68.1
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 3.2e-57 226.1 257 58.0
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.3e-55 220.7 216 65.3
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 3.4e-51 206.1 257 52.9
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 3.2e-49 199.5 316 47.5
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 5.5e-49 198.7 274 53.3
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 7.2e-49 198.4 276 50.7
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 6.7e-47 191.8 279 51.3
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 3.7e-45 186.0 262 49.2
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.0e-42 177.9 264 49.6
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.2e-42 176.8 278 47.1
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 1.4e-39 167.5 275 45.8
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 1.8e-39 167.2 257 45.1
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.5e-38 164.1 180 61.7
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 9.7e-38 161.4 272 44.9
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 1.3e-37 161.0 270 45.6
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 2.2e-37 160.2 261 48.3
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 2.8e-37 159.8 266 45.9
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 2.8e-37 159.8 266 45.5
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 2.8e-37 159.8 266 45.5
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 3.7e-37 159.5 269 43.9
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 4.8e-37 159.1 252 46.0
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 4.8e-37 159.1 270 52.2
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.8e-36 157.1 266 42.9
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 2.4e-36 156.8 266 42.9
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 3.1e-36 156.4 271 42.8
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 4.1e-36 156.0 260 45.0
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 1.2e-35 154.5 256 45.3
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.5e-35 154.1 270 43.0
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 5.9e-35 152.1 229 46.3
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 5.0e-34 149.1 258 44.2
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 5.0e-34 149.1 264 43.2
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 6.5e-34 148.7 270 43.0
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 8.5e-34 148.3 279 42.3
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 1.4e-33 147.5 259 45.2
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.9e-33 147.1 258 41.1
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 5.5e-33 145.6 256 41.4
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 4.7e-32 142.5 280 42.1
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.3e-31 140.2 279 40.5
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 3.0e-31 139.8 260 42.7
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 1.5e-30 137.5 263 42.6
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 5.7e-30 135.6 272 40.8
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 1.3e-29 134.4 234 45.7
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 1.7e-29 134.0 248 43.1
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.1e-28 131.3 263 39.5
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.1e-28 131.3 253 40.3
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 3.1e-28 129.8 231 43.7
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 3.1e-28 129.8 263 39.5
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 4.1e-28 129.4 251 41.0
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 5.3e-28 129.0 263 40.3
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.0e-27 127.1 256 39.8
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.0e-27 127.1 286 39.9
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 5.9e-27 125.6 279 39.8
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 5.9e-27 125.6 273 40.3
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 2.2e-26 123.6 252 40.9
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 2.9e-26 123.2 255 40.8
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 6.5e-26 122.1 252 41.3
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.5e-25 120.2 286 38.5
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 7.2e-25 118.6 252 39.3
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 6.1e-24 115.5 285 36.8
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 6.1e-24 115.5 145 52.4
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 2.3e-23 113.6 282 35.1
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 5.2e-23 112.5 264 39.8
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 6.7e-23 112.1 263 38.0
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 1.5e-22 110.9 252 37.7
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 2.6e-22 110.2 269 36.8
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 4.4e-22 109.4 252 36.1
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 7.5e-22 108.6 269 36.4
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 3.7e-21 106.3 272 42.6
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 3.1e-20 103.2 249 37.8
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 9.1e-20 101.7 207 40.6
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 4.5e-19 99.4 362 29.0
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 7.7e-19 98.6 252 36.1
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.6e-16 90.9 271 31.7
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 4.7e-16 89.4 271 33.6
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 1.0e-15 88.2 246 33.7
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 6.8e-15 85.5 266 44.4
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 8.8e-15 85.1 123 48.0
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 7.5e-14 82.0 242 32.2
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 1.7e-13 80.9 251 31.5
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 8.3e-13 78.6 251 34.3
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 1.4e-12 77.8 293 37.5
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 2.4e-12 77.0 268 29.1
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 9.1e-12 75.1 69 68.1
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 1.2e-11 74.7 181 37.6
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 1.2e-11 74.7 181 37.6
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 2.0e-11 73.9 250 31.6
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 2.7e-11 73.6 252 30.6
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 7.7e-11 72.0 129 48.1
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 1.7e-10 70.9 226 31.9
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 1.7e-10 70.9 256 30.5
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 2.2e-10 70.5 230 31.3
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.9e-09 67.4 88 55.7
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 5.5e-09 65.9 228 31.1
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 7.2e-09 65.5 42 73.8
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 1.2e-08 64.7 263 27.0
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 1.6e-08 64.3 122 38.5
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 1.6e-08 64.3 122 38.5
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 2.3e-07 60.5 135 34.8
TAR624G1080 Trochodendron aralioides HOM05D007616 ORTHO05D008751 2.3e-07 60.5 112 38.4
Ciclev10003995m.g Citrus clementina HOM05D007616 ORTHO05D008751 5.2e-07 59.3 33 84.8
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 4.4e-06 56.2 230 27.4
unitig_21.g20913 Utricularia gibba HOM05D007616 ORTHO05D008751 4.4e-06 56.2 243 30.0


User provided reference genes

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