Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 2.3e-51 205.3 105 100.0
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 1.5e-39 166.0 104 85.6
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 1.6e-36 156.0 102 81.4
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 2.7e-28 128.6 103 68.9
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 1.1e-24 116.7 101 63.4
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 9.4e-21 103.6 107 58.9
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.0e-18 95.9 83 60.2
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 9.8e-18 93.6 110 55.5
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 1.3e-17 93.2 102 54.9
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 2.2e-17 92.4 106 52.8
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.1e-16 90.1 82 59.8
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 1.4e-16 89.7 94 52.1
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.8e-16 89.4 82 59.8
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.8e-16 89.4 81 60.5
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 1.8e-16 89.4 92 57.6
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 2.4e-16 89.0 102 49.0
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 2.4e-16 89.0 83 56.6
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 2.4e-16 89.0 107 50.5
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 3.1e-16 88.6 82 58.5
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 3.1e-16 88.6 94 51.1
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 3.1e-16 88.6 94 54.3
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 4.1e-16 88.2 102 50.0
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 4.1e-16 88.2 108 51.9
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 4.1e-16 88.2 92 56.5
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 4.1e-16 88.2 108 51.9
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 4.1e-16 88.2 81 59.3
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 4.1e-16 88.2 90 56.7
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 5.4e-16 87.8 82 58.5
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 7.0e-16 87.4 94 56.4
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 7.0e-16 87.4 106 48.1
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 7.0e-16 87.4 84 58.3
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 9.1e-16 87.0 85 56.5
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 1.2e-15 86.7 82 58.5
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 1.2e-15 86.7 82 58.5
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 1.6e-15 86.3 100 54.0
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.6e-15 86.3 82 58.5
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 2.0e-15 85.9 85 56.5
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 2.0e-15 85.9 98 53.1
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 2.7e-15 85.5 86 55.8
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 2.7e-15 85.5 86 55.8
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 2.7e-15 85.5 86 55.8
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 2.7e-15 85.5 90 52.2
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 3.5e-15 85.1 86 53.5
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 3.5e-15 85.1 77 59.7
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 4.5e-15 84.7 82 58.5
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 4.5e-15 84.7 84 54.8
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 7.7e-15 84.0 97 47.4
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 7.7e-15 84.0 56 71.4
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 7.7e-15 84.0 91 50.5
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 7.7e-15 84.0 67 64.2
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 7.7e-15 84.0 86 52.3
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 1.0e-14 83.6 82 57.3
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 1.0e-14 83.6 93 53.8
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.0e-14 83.6 76 60.5
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.3e-14 83.2 77 58.4
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 1.3e-14 83.2 126 44.4
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 1.7e-14 82.8 106 50.9
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 1.7e-14 82.8 52 73.1
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 1.7e-14 82.8 105 48.6
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 2.9e-14 82.0 83 56.6
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 2.9e-14 82.0 71 64.8
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 2.9e-14 82.0 72 63.9
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 3.8e-14 81.6 82 57.3
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 3.8e-14 81.6 70 64.3
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 3.8e-14 81.6 70 64.3
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 3.8e-14 81.6 55 69.1
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 5.0e-14 81.3 95 49.5
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 5.0e-14 81.3 82 56.1
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 6.5e-14 80.9 54 72.2
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 6.5e-14 80.9 81 59.3
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 6.5e-14 80.9 106 48.1
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.1e-13 80.1 83 53.0
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 1.5e-13 79.7 82 54.9
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.9e-13 79.3 87 50.6
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 1.9e-13 79.3 107 46.7
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 1.9e-13 79.3 107 46.7
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 1.9e-13 79.3 97 47.4
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 7.2e-13 77.4 88 50.0
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 9.5e-13 77.0 116 47.4
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 9.5e-13 77.0 88 51.1
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 9.5e-13 77.0 94 52.1
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.2e-12 76.6 70 61.4
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 1.6e-12 76.3 92 51.1
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 1.6e-12 76.3 72 55.6
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 2.1e-12 75.9 70 58.6
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 2.1e-12 75.9 67 61.2
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 2.1e-12 75.9 91 52.7
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 2.7e-12 75.5 88 51.1
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 3.6e-12 75.1 105 44.8
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 3.6e-12 75.1 95 47.4
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 4.7e-12 74.7 68 58.8
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 6.1e-12 74.3 82 53.7
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 6.1e-12 74.3 82 53.7
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 1.4e-11 73.2 48 68.8
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 2.3e-11 72.4 99 49.5
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 2.3e-11 72.4 97 42.3
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.3e-11 72.4 88 47.7
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 6.8e-11 70.9 50 68.0
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 9.8e-10 67.0 56 60.7
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 1.3e-09 66.6 94 39.4
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 1.3e-09 66.6 56 58.9
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.8e-08 62.8 49 65.3
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.4e-08 62.4 90 50.0
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 3.1e-08 62.0 95 44.2
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 4.1e-08 61.6 87 43.7
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 4.1e-08 61.6 41 73.2
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 3.5e-07 58.5 90 47.8
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.0e-06 57.0 58 53.4
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 2.3e-06 55.8 98 45.9
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 3.8e-06 55.1 46 67.4


User provided reference genes

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