Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 0.0e+00 1094.0 540 100.0
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 3.7e-302 1040.8 541 94.3
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 3.7e-294 1014.2 541 92.6
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 5.5e-290 1000.3 541 90.4
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 1.8e-285 985.3 540 89.1
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 7.2e-282 973.4 541 87.8
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 4.6e-281 970.7 541 87.6
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 4.7e-273 944.1 572 82.3
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 3.3e-271 937.9 556 82.6
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 1.3e-270 936.0 541 83.5
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 1.3e-270 936.0 544 84.9
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 2.8e-270 934.9 544 84.0
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 6.3e-270 933.7 544 84.4
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 5.3e-269 930.6 540 84.3
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 1.2e-268 929.5 540 83.3
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 5.9e-268 927.2 544 83.1
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 2.2e-267 925.2 543 82.9
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 2.2e-267 925.2 543 82.9
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 2.2e-267 925.2 540 83.1
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 2.9e-267 924.9 545 83.1
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 3.8e-267 924.5 542 84.5
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 6.5e-267 923.7 544 83.5
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 9.4e-266 919.8 544 82.7
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 1.0e-264 916.4 545 82.8
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 1.8e-264 915.6 549 82.0
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 2.3e-264 915.2 540 83.0
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 1.2e-263 912.9 543 82.3
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.5e-263 912.5 543 81.0
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 1.5e-263 912.5 546 81.5
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 3.3e-263 911.4 546 82.6
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 3.3e-263 911.4 543 82.3
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.4e-263 911.0 543 81.2
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 7.5e-263 910.2 543 82.3
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 3.7e-262 907.9 540 83.0
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 6.3e-262 907.1 539 81.8
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.4e-261 906.0 544 81.8
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 3.1e-261 904.8 541 84.1
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 4.1e-261 904.4 544 81.1
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 1.6e-260 902.5 546 80.4
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 2.0e-260 902.1 543 81.4
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 3.5e-260 901.4 550 80.4
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 5.9e-260 900.6 541 81.3
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 5.9e-260 900.6 547 81.0
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 7.7e-260 900.2 543 81.2
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.0e-259 899.8 544 80.9
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 1.0e-259 899.8 561 79.5
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 2.2e-259 898.7 543 81.2
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 5.0e-259 897.5 522 81.8
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 8.5e-259 896.7 546 80.2
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 8.5e-259 896.7 542 80.6
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 8.5e-259 896.7 575 76.7
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 1.1e-258 896.3 547 80.1
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.1e-258 896.3 580 77.6
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 1.5e-258 896.0 549 79.8
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 1.5e-258 896.0 544 80.7
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 1.9e-258 895.6 527 82.2
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 4.2e-258 894.4 546 80.0
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 4.2e-258 894.4 544 80.7
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 7.2e-258 893.6 545 80.6
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 1.6e-257 892.5 542 80.8
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 4.7e-257 891.0 561 77.7
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 1.4e-256 889.4 549 79.6
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 1.4e-256 889.4 546 79.7
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 4.0e-256 887.9 545 79.1
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 5.2e-256 887.5 556 78.6
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 5.2e-256 887.5 556 78.6
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 2.0e-255 885.6 541 80.8
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 2.0e-255 885.6 541 79.9
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.7e-254 882.5 544 80.0
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 6.3e-254 880.6 561 77.9
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 1.1e-253 879.8 641 71.5
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 2.4e-253 878.6 543 79.7
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 3.1e-253 878.2 545 78.9
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 5.4e-253 877.5 568 76.6
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 9.1e-253 876.7 548 78.5
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 1.6e-252 875.9 550 79.8
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 2.0e-252 875.5 534 80.1
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 2.7e-252 875.2 542 78.0
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 3.8e-251 871.3 546 78.4
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 3.8e-251 871.3 566 77.4
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 2.5e-250 868.6 547 77.9
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 2.5e-250 868.6 543 77.9
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 1.6e-249 865.9 543 77.7
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 2.1e-249 865.5 542 78.2
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 4.7e-249 864.4 542 79.2
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 1.5e-247 859.4 554 77.4
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 5.7e-247 857.4 556 75.9
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 2.7e-244 848.6 544 77.4
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 4.5e-244 847.8 541 77.6
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 4.3e-242 841.3 542 76.6
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 2.6e-239 832.0 534 75.8
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 3.7e-238 828.2 575 73.2
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 1.1e-237 826.6 498 81.1
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 3.9e-235 818.1 555 74.1
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 3.7e-222 775.0 549 72.3
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 3.7e-222 775.0 486 76.7
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 1.3e-219 766.5 553 69.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 5.8e-215 751.1 538 69.3
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 1.7e-214 749.6 512 70.1
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 1.0e-211 740.3 540 68.9
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 9.6e-210 733.8 447 80.1
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 2.0e-207 726.1 543 68.1
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 7.6e-207 724.2 430 80.5
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 4.8e-201 704.9 524 67.2
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 4.2e-173 612.1 542 60.9
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 2.1e-164 583.2 528 57.6
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.5e-162 577.0 328 85.1
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 8.5e-158 561.2 540 56.9
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 8.0e-156 554.7 332 82.2
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 1.0e-150 537.7 401 68.8
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 1.6e-148 530.4 547 50.1
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.8e-147 526.9 291 86.3
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 2.2e-145 520.0 294 85.4
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.2e-135 487.6 297 80.5
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 4.7e-132 475.7 536 48.3
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 3.1e-128 463.0 540 50.2
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 2.3e-126 456.8 258 84.1
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 4.4e-122 442.6 317 70.3
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 2.0e-119 433.7 236 86.4
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 7.3e-109 398.7 261 76.2
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 3.8e-89 333.2 214 79.4
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 9.3e-88 328.6 218 74.8
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.7e-79 300.4 195 77.4
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 2.7e-71 273.9 417 40.0
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 2.1e-68 264.2 234 59.4
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 1.2e-58 231.9 116 94.8
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 1.2e-55 221.9 220 55.0
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 2.2e-49 201.1 103 92.2
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 7.2e-48 196.1 112 85.7
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 2.8e-44 184.1 115 81.7
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 4.8e-44 183.3 111 79.3
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 5.9e-42 176.4 85 95.3
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 2.2e-41 174.5 97 85.6
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 2.5e-40 171.0 97 84.5
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 5.5e-32 143.3 122 59.8
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 2.7e-31 141.0 102 70.6
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 1.1e-27 129.0 80 76.2
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 6.5e-25 119.8 151 48.3
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 1.0e-22 112.5 54 90.7
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 4.5e-18 97.1 66 68.2
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 2.9e-17 94.4 57 77.2
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 1.1e-16 92.4 48 85.4
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 5.4e-11 73.6 36 86.1
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 2.5e-08 64.7 31 87.1
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 2.5e-08 64.7 31 87.1
C06p35720 Brassica napus HOM05D003697 ORTHO05D024366 3.1e-06 57.8 88 50.0
BolC6t38695H Brassica oleracea HOM05D003697 ORTHO05D024366 3.1e-06 57.8 88 50.0
Medtr1g089820 Medicago truncatula HOM05D000488 ORTHO05D000347 3.1e-06 57.8 191 27.2
TPR.G13304 Trifolium pratense HOM05D000488 ORTHO05D000347 3.1e-06 57.8 175 26.3


User provided reference genes

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