Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 6.2e-266 920.2 465 100.0
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 6.7e-244 847.0 467 91.4
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.8e-242 841.6 466 91.0
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.2e-240 836.3 467 90.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 4.2e-230 801.2 466 86.1
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 5.5e-230 800.8 470 86.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.4e-228 796.2 470 86.6
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 1.3e-226 789.6 468 84.6
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.4e-222 776.2 470 83.4
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 2.1e-221 772.3 473 83.3
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 7.2e-198 694.1 472 75.6
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 9.4e-198 693.7 470 76.4
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 8.0e-197 690.6 471 76.2
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.0e-196 690.3 470 76.6
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 1.0e-196 690.3 464 76.1
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.4e-196 689.9 471 76.2
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.8e-196 689.5 470 75.5
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.2e-195 686.8 470 75.3
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.2e-195 686.8 470 74.7
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 5.7e-195 684.5 470 75.7
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 2.2e-194 682.6 471 74.3
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.9e-194 681.4 471 74.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.3e-194 681.0 467 73.9
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.3e-194 680.6 470 74.3
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.3e-194 680.6 467 73.9
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.8e-193 679.5 470 74.3
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.8e-193 679.5 470 74.3
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.8e-193 679.5 460 75.0
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.8e-193 679.5 470 74.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 5.4e-193 677.9 456 75.2
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.4e-193 677.9 470 73.8
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.0e-193 677.6 470 73.8
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.1e-193 677.2 467 73.4
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 4.5e-192 674.9 476 73.5
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 7.7e-192 674.1 472 73.9
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.0e-191 673.7 453 75.3
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.0e-191 673.7 470 73.6
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.3e-191 672.5 454 76.4
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.3e-191 672.5 476 73.3
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.5e-190 669.8 458 74.9
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.9e-190 669.5 453 74.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.9e-190 669.5 467 74.3
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.9e-190 669.5 471 74.3
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 4.2e-190 668.3 470 73.0
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 7.2e-190 667.5 453 75.1
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 2.8e-189 665.6 458 74.2
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 2.8e-189 665.6 458 74.2
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 3.6e-189 665.2 466 72.7
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 6.1e-189 664.5 458 74.0
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 6.1e-189 664.5 461 74.2
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.0e-188 663.7 472 72.9
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 2.3e-188 662.5 463 74.5
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.3e-188 662.5 458 73.8
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 3.0e-188 662.1 458 73.8
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 4.0e-188 661.8 454 74.0
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 5.2e-188 661.4 463 74.1
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 2.6e-187 659.1 432 77.1
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 2.9e-186 655.6 471 71.5
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.9e-186 655.6 470 71.3
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 4.9e-186 654.8 463 71.7
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.9e-186 654.8 438 76.0
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 6.3e-186 654.4 464 73.7
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.1e-185 653.7 455 74.5
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 1.1e-185 653.7 471 71.8
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.4e-185 653.3 438 75.8
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.2e-185 652.1 470 72.3
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 4.1e-185 651.7 467 72.6
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.1e-185 651.7 456 73.0
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.1e-185 651.7 456 73.0
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 5.4e-185 651.4 478 70.9
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.6e-184 649.8 460 71.7
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.0e-184 649.4 434 75.6
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 5.9e-184 647.9 454 73.6
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.0e-183 647.1 439 74.0
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.7e-183 646.4 467 70.0
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 2.9e-183 645.6 470 71.1
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 5.0e-183 644.8 471 71.1
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.0e-183 644.8 459 72.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 5.0e-183 644.8 434 73.7
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.6e-183 644.4 476 70.8
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 7.3e-182 641.0 466 71.0
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 3.6e-181 638.6 455 71.4
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.0e-180 637.1 447 73.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.0e-180 637.1 457 69.8
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.4e-180 636.7 455 70.8
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 2.3e-180 636.0 463 71.7
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.2e-179 633.6 445 73.5
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.5e-179 633.3 452 71.9
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 9.8e-179 630.6 453 72.2
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.2e-178 629.4 466 70.4
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 8.3e-178 627.5 460 70.2
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 4.1e-177 625.2 471 70.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 7.0e-177 624.4 465 68.8
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 9.2e-177 624.0 493 67.1
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.0e-176 622.9 435 72.2
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-175 620.5 451 70.1
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.0e-175 619.0 422 73.2
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.9e-174 616.3 432 73.6
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.8e-172 609.8 466 67.4
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.6e-171 605.9 468 67.3
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.2e-170 602.8 468 67.3
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.0e-167 594.0 493 63.7
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 8.6e-167 590.9 578 57.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.6e-165 586.6 439 68.6
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 6.2e-165 584.7 473 64.9
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-164 583.9 472 65.5
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.4e-164 583.6 452 66.6
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.2e-163 580.5 437 67.3
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 7.6e-163 577.8 464 63.6
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 9.9e-163 577.4 375 76.5
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.9e-162 575.1 464 63.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.4e-161 573.5 466 63.5
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.4e-161 571.6 469 64.8
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 2.7e-160 569.3 473 63.8
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 2.5e-158 562.8 459 64.1
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 4.3e-158 562.0 466 65.0
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.0e-155 553.1 397 68.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 9.3e-153 544.3 434 65.4
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.4e-148 529.6 454 61.5
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.7e-144 516.2 469 61.4
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.9e-143 512.3 385 68.8
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.8e-141 506.1 412 66.3
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 8.1e-141 504.6 357 72.3
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.4e-139 499.2 438 59.1
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.5e-134 483.8 352 69.6
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 6.9e-132 474.9 370 66.2
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 4.5e-131 472.2 440 57.0
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.7e-130 470.3 429 58.5
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 5.5e-129 465.3 450 55.3
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.1e-128 463.4 397 61.0
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.3e-125 454.1 467 54.2
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.8e-117 426.4 395 59.0
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 3.1e-116 422.9 314 66.9
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-110 404.4 262 78.6
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.5e-99 366.3 337 59.9
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.5e-97 360.1 299 63.5
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.2e-88 331.3 258 65.1
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 8.0e-88 328.6 197 82.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 7.7e-83 312.0 212 75.0
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.5e-82 308.9 213 75.6
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 7.0e-76 288.9 441 42.2
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 1.0e-63 248.4 181 71.8
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 5.6e-49 199.5 155 71.0
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 4.7e-48 196.4 139 74.1
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.0e-38 164.5 207 47.8
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.0e-34 150.6 150 54.0
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 4.8e-32 143.3 149 55.0
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 2.6e-22 110.9 61 91.8
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.2e-11 75.5 56 60.7


User provided reference genes

Program Settings