Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.9e-99 365.9 192 100.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.4e-78 295.8 185 85.9
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 7.6e-69 264.2 185 79.5
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 2.5e-64 249.2 236 62.7
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 7.6e-61 237.7 230 61.7
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.9e-59 233.0 223 60.5
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 3.2e-59 232.3 223 60.5
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 4.6e-58 228.4 223 60.1
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.0e-57 225.7 236 57.6
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.9e-57 225.3 229 59.0
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 1.1e-56 223.8 231 59.3
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 5.7e-56 221.5 261 54.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 6.9e-54 214.5 228 57.0
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 6.1e-50 201.4 187 62.6
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.7e-49 198.0 189 59.3
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 2.0e-48 196.4 186 60.8
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 5.7e-48 194.9 190 60.5
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 5.7e-48 194.9 186 62.9
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 7.4e-48 194.5 189 58.2
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 7.4e-48 194.5 189 61.9
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 9.7e-48 194.1 192 60.4
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.3e-47 193.7 188 61.2
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.3e-47 193.7 184 60.3
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 2.8e-47 192.6 180 61.7
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 3.7e-47 192.2 189 61.9
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.8e-47 191.8 187 60.4
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 4.8e-47 191.8 193 60.6
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.3e-47 191.4 194 59.3
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.2e-47 191.0 188 60.6
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.1e-46 190.7 180 61.1
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 1.4e-46 190.3 190 57.9
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.8e-46 189.9 177 62.7
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 3.1e-46 189.1 191 61.3
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 9.1e-46 187.6 190 61.1
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.5e-45 186.8 191 61.3
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.5e-45 186.8 194 59.8
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.6e-45 186.0 187 60.4
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 2.6e-45 186.0 193 59.6
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.5e-45 185.3 187 59.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.5e-45 185.3 191 60.7
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 7.7e-45 184.5 182 58.2
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 2.2e-44 183.0 187 58.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 2.2e-44 183.0 189 59.3
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 2.9e-44 182.6 182 57.7
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 2.9e-44 182.6 118 81.4
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 5.0e-44 181.8 178 62.9
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 5.0e-44 181.8 190 57.9
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 8.5e-44 181.0 183 56.3
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 8.5e-44 181.0 197 58.9
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.1e-43 180.6 179 58.1
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.4e-43 180.3 188 58.5
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.4e-43 180.3 182 57.1
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 4.2e-43 178.7 185 58.4
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 5.5e-43 178.3 168 64.3
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.5e-43 178.3 177 58.2
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 7.2e-43 177.9 187 58.8
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 7.2e-43 177.9 171 63.2
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 7.2e-43 177.9 191 55.5
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.2e-42 177.2 191 54.5
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.6e-42 176.8 176 60.8
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 2.7e-42 176.0 177 60.5
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.7e-42 176.0 187 59.9
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 3.6e-42 175.6 192 56.2
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 4.7e-42 175.3 169 61.5
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.7e-42 175.3 187 56.7
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 4.7e-42 175.3 180 56.1
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 6.1e-42 174.9 172 59.9
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 8.0e-42 174.5 172 58.7
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.0e-41 174.1 195 56.4
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.0e-41 174.1 185 57.3
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 3.0e-41 172.6 191 56.0
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 3.0e-41 172.6 183 55.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 5.2e-41 171.8 207 52.2
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 6.7e-41 171.4 189 57.1
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 8.8e-41 171.0 191 54.5
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.1e-40 170.6 191 53.9
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.0e-40 169.9 186 55.9
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 5.7e-40 168.3 169 59.2
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.3e-39 167.2 167 61.1
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 2.2e-39 166.4 184 53.8
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 3.7e-39 165.6 173 58.4
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 3.7e-39 165.6 194 54.1
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 6.3e-39 164.9 176 59.1
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 8.2e-39 164.5 174 58.6
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.6e-37 160.2 183 54.1
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 2.0e-37 159.8 186 53.8
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 2.6e-37 159.5 186 52.2
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 2.6e-37 159.5 175 57.7
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 4.5e-37 158.7 171 57.3
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-36 157.1 189 52.9
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.3e-36 157.1 186 52.2
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 3.8e-36 155.6 201 50.2
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 5.0e-36 155.2 191 51.3
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.5e-36 154.8 179 54.2
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 8.5e-36 154.5 193 50.8
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 8.5e-36 154.5 193 50.8
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 2.5e-35 152.9 189 53.4
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.2e-34 150.6 192 51.0
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-34 150.6 184 52.2
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 6.1e-34 148.3 182 51.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 6.1e-34 148.3 169 55.0
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 8.0e-34 147.9 195 49.2
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.8e-33 146.7 150 59.3
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 5.2e-33 145.2 169 55.0
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 2.6e-32 142.9 200 47.0
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.4e-32 142.1 188 50.0
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.3e-31 140.6 241 42.3
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.7e-31 140.2 183 50.8
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 2.2e-31 139.8 149 58.4
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 3.7e-31 139.0 191 47.6
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 3.7e-31 139.0 218 44.0
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 4.8e-31 138.7 171 49.7
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 8.2e-31 137.9 152 57.9
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 4.1e-30 135.6 165 52.7
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 9.1e-30 134.4 218 45.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.2e-29 134.0 191 48.7
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-29 133.3 172 51.7
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 5.9e-29 131.7 165 47.9
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 7.7e-29 131.3 175 47.4
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.3e-28 130.6 173 47.4
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 6.5e-28 128.3 202 46.5
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 6.5e-28 128.3 202 46.5
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.1e-26 123.2 164 45.7
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.7e-26 122.9 183 45.4
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 3.6e-26 122.5 191 44.5
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 6.1e-26 121.7 151 51.7
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 8.0e-26 121.3 208 43.8
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.2e-24 117.5 199 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.2e-24 117.5 199 44.2
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 3.4e-24 115.9 81 76.5
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 4.4e-24 115.5 73 80.8
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 5.7e-24 115.2 207 43.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 9.8e-24 114.4 189 45.5
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 8.3e-23 111.3 163 47.2
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-22 110.5 188 46.3
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 5.4e-22 108.6 204 41.2
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 4.5e-21 105.5 189 43.4
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.3e-20 104.0 115 53.9
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.3e-20 104.0 114 60.5
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 6.6e-20 101.7 128 50.8
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 5.5e-19 98.6 109 56.9
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 4.7e-18 95.5 134 48.5
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-18 95.1 63 76.2
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-18 95.1 63 76.2
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-18 95.1 63 76.2
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-18 95.1 63 76.2
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 2.3e-17 93.2 60 78.3
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-17 92.8 56 83.9
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-17 92.8 58 79.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 8.9e-17 91.3 56 82.1
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 8.9e-17 91.3 75 68.0
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.5e-16 90.5 126 51.6
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 2.2e-15 86.7 110 50.0
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 8.3e-15 84.7 184 38.6
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.4e-14 84.0 108 50.0
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 7.0e-14 81.6 54 75.9
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 9.2e-14 81.3 184 38.0
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 2.7e-13 79.7 120 46.7
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 7.8e-13 78.2 123 46.3
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-12 77.8 46 82.6
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.0e-12 77.8 46 82.6
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.6e-10 70.5 51 66.7
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.3e-09 66.6 52 65.4
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 4.0e-09 65.9 140 39.3
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.0e-09 65.9 51 64.7
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 7.5e-08 61.6 38 76.3
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.3e-07 60.8 54 55.6
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 2.2e-07 60.1 46 63.0
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 2.9e-07 59.7 133 35.3
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.4e-07 58.5 84 47.6
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 2.4e-06 56.6 173 30.6


User provided reference genes

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