Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 9.6e-115 416.8 201 100.0
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 3.6e-77 292.0 187 76.5
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.4e-68 263.5 187 70.1
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 6.3e-66 254.6 188 69.1
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 5.0e-63 245.0 187 64.2
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 3.3e-62 242.3 188 62.8
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 4.2e-62 241.9 192 60.4
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 7.2e-62 241.1 192 61.5
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 9.5e-62 240.7 187 62.6
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 2.1e-61 239.6 192 60.4
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 6.1e-61 238.0 192 59.9
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 8.0e-61 237.7 199 61.8
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.4e-60 236.9 193 56.5
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 1.4e-60 236.9 187 62.0
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 1.8e-60 236.5 192 59.4
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 1.8e-60 236.5 192 59.4
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.0e-60 235.7 192 56.8
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 4.0e-60 235.3 187 62.0
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 4.0e-60 235.3 187 60.4
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 5.2e-60 235.0 192 59.4
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 8.9e-60 234.2 192 57.8
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 1.2e-59 233.8 192 58.3
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 3.4e-59 232.3 192 59.4
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 5.7e-59 231.5 199 58.3
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 7.5e-59 231.1 192 58.9
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 1.7e-58 229.9 187 60.4
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 6.3e-58 228.0 200 58.5
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 8.3e-58 227.6 191 58.1
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 1.1e-57 227.3 187 59.4
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.8e-57 226.5 187 58.8
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 2.4e-57 226.1 188 58.5
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 2.4e-57 226.1 187 58.8
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 5.4e-57 224.9 187 58.8
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 5.4e-57 224.9 187 58.8
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 9.2e-57 224.2 187 58.3
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 9.2e-57 224.2 192 54.7
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 9.2e-57 224.2 187 59.4
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 2.0e-56 223.0 197 56.3
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 2.7e-56 222.6 192 58.3
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 2.7e-56 222.6 190 58.9
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 4.5e-56 221.9 192 54.2
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 4.5e-56 221.9 191 57.1
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 5.9e-56 221.5 189 58.2
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 5.9e-56 221.5 187 58.3
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 7.8e-56 221.1 181 59.1
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 7.8e-56 221.1 189 58.2
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 1.7e-55 219.9 189 57.1
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 5.0e-55 218.4 192 57.3
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 5.0e-55 218.4 191 56.5
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 1.9e-54 216.5 189 56.1
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 7.3e-54 214.5 192 54.7
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 7.3e-54 214.5 189 56.6
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 1.2e-53 213.8 189 55.6
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 1.6e-53 213.4 187 57.8
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 2.8e-53 212.6 192 55.2
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 3.6e-53 212.2 192 53.6
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 8.0e-53 211.1 187 55.6
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 1.0e-52 210.7 192 56.8
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 1.0e-52 210.7 190 57.4
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 1.0e-52 210.7 189 55.6
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 4.4e-51 205.3 187 53.5
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.3e-50 203.8 176 54.0
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 2.2e-50 203.0 193 50.8
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 8.3e-50 201.1 192 50.0
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 2.0e-48 196.4 187 52.9
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 1.7e-47 193.4 193 51.3
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 2.1e-45 186.4 192 48.4
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 3.6e-45 185.7 192 52.1
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 5.2e-44 181.8 187 50.8
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 6.8e-44 181.4 173 53.2
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 2.0e-43 179.9 165 54.5
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 1.5e-38 163.7 187 50.3
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 1.8e-36 156.8 202 39.1
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 1.2e-35 154.1 129 64.3
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 1.9e-30 136.7 173 43.9
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 3.8e-26 122.5 133 47.4
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 2.7e-24 116.3 108 54.6
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 5.3e-20 102.1 60 73.3
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 2.0e-19 100.1 95 52.6
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 9.3e-17 91.3 113 46.0
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 1.6e-16 90.5 48 79.2
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.3e-10 70.9 34 88.2
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 6.4e-10 68.6 38 76.3
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 8.7e-07 58.2 117 36.8
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 1.5e-06 57.4 70 42.9
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 1.9e-06 57.0 37 64.9


User provided reference genes

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