Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.6e-77 292.0 145 100.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.1e-54 215.3 170 71.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.1e-50 202.6 170 67.6
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.2e-47 193.4 170 64.7
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 3.1e-46 188.7 170 64.1
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 9.9e-45 183.7 170 61.2
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-44 183.3 170 60.6
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-44 183.3 170 60.6
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-44 183.3 170 60.6
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 2.2e-44 182.6 170 61.2
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.8e-44 181.8 170 60.6
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 4.9e-44 181.4 170 59.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.4e-43 179.9 170 60.0
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 2.4e-43 179.1 169 59.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.2e-43 178.7 169 59.8
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 4.6e-42 174.9 169 59.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 3.0e-41 172.2 170 56.5
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 3.0e-41 172.2 170 57.6
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 3.9e-41 171.8 172 58.1
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 5.1e-41 171.4 170 56.5
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 8.7e-41 170.6 170 57.1
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.5e-40 169.9 172 57.0
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.9e-40 169.5 172 57.0
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.9e-40 169.5 170 55.9
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.9e-40 169.5 170 57.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.5e-40 169.1 172 56.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.5e-40 169.1 170 56.5
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.3e-40 168.7 172 56.4
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.3e-40 168.7 172 56.4
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.3e-40 168.7 172 56.4
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 3.3e-40 168.7 172 56.4
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.3e-40 168.7 172 56.4
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.3e-40 168.3 170 55.3
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 4.3e-40 168.3 172 56.4
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 7.3e-40 167.5 172 55.8
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 9.6e-40 167.2 172 55.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.1e-39 166.0 170 55.3
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.1e-39 166.0 172 52.9
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.8e-39 165.6 172 55.8
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 4.8e-39 164.9 172 54.7
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 6.2e-39 164.5 170 55.9
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 6.2e-39 164.5 173 56.6
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.2e-39 164.5 172 55.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 6.2e-39 164.5 172 55.8
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 6.2e-39 164.5 170 54.1
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 8.1e-39 164.1 172 56.4
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.8e-38 162.9 170 54.1
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.8e-38 162.9 170 55.3
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.8e-38 162.9 170 55.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.8e-38 162.9 170 54.7
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.4e-38 162.5 172 53.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.4e-38 162.5 170 53.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.4e-38 162.5 170 52.4
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.4e-38 162.5 169 53.8
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 4.0e-38 161.8 172 55.8
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 5.3e-38 161.4 170 55.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 6.9e-38 161.0 170 54.1
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 6.9e-38 161.0 170 54.7
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 6.9e-38 161.0 170 54.1
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.0e-38 160.6 170 54.1
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 9.0e-38 160.6 172 54.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.2e-37 160.2 170 51.8
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.5e-37 159.8 170 54.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.5e-37 159.8 170 52.9
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.5e-37 159.8 170 53.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.5e-37 159.8 172 53.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.0e-37 159.5 169 53.8
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.6e-37 159.1 170 52.4
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 3.4e-37 158.7 170 53.5
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.8e-37 157.9 170 52.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 7.6e-37 157.5 170 54.7
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 7.6e-37 157.5 171 53.8
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 9.9e-37 157.1 170 54.1
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.3e-36 156.8 170 53.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 2.2e-36 156.0 170 53.5
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.9e-36 155.6 170 53.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.9e-36 155.6 171 53.2
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.9e-36 155.6 171 53.2
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.9e-36 155.6 171 53.2
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.8e-36 155.2 170 52.9
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.4e-36 154.5 171 52.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.9e-35 152.9 172 52.9
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 4.2e-35 151.8 170 49.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.6e-34 149.8 171 52.6
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 4.6e-34 148.3 170 48.8
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.0e-33 145.6 170 49.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 6.7e-33 144.4 182 48.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.1e-32 143.7 171 50.9
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.9e-32 142.9 170 47.6
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.3e-32 142.1 171 50.3
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 3.3e-32 142.1 192 45.8
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 4.3e-32 141.7 171 50.9
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.6e-32 141.4 170 47.6
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 2.1e-31 139.4 153 52.3
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.1e-30 135.6 180 45.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.9e-30 134.4 180 45.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.2e-29 133.7 142 54.2
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 3.4e-29 132.1 142 53.5
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 4.5e-29 131.7 142 52.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.7e-28 129.8 170 45.3
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.4e-28 127.9 79 78.5
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 7.1e-27 124.4 140 51.4
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.7e-26 122.5 173 46.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.3e-25 120.2 171 47.4
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.0e-25 119.0 172 44.2
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.9e-25 118.6 142 47.9
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.5e-24 116.7 152 47.4
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 6.5e-20 101.3 102 52.9
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 3.0e-17 92.4 169 36.7
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 4.3e-16 88.6 108 51.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.2e-15 86.3 115 49.6
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 6.3e-15 84.7 61 67.2
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.8e-14 83.2 169 32.5
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.1e-14 82.4 94 47.9
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.7e-13 77.8 170 34.1
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.0e-12 77.4 169 31.4
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.6e-10 70.1 47 70.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.1e-10 69.7 158 31.0


User provided reference genes

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