Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g202200 Pisum sativum HOM05D000112 ORTHO05D319657 3.0e-146 521.9 279 100.0
Psat1g202240 Pisum sativum HOM05D000112 ORTHO05D004941 3.0e-21 106.7 253 36.8
Ca_00374_v3 Cicer arietinum L. HOM05D000112 ORTHO05D004941 3.1e-18 96.7 247 35.6
Medtr2g014770 Medicago truncatula HOM05D000112 ORTHO05D004941 5.2e-18 95.9 245 35.9
TPR.G11716 Trifolium pratense HOM05D000112 ORTHO05D004941 5.2e-18 95.9 247 34.8
Phvul.006G181200 Phaseolus vulgaris HOM05D000112 ORTHO05D004941 5.8e-17 92.4 243 34.6
VMungo0540G2118 Vigna mungo HOM05D000112 ORTHO05D004941 2.9e-16 90.1 246 33.3
Glyma.15G078800 Glycine max HOM05D000112 ORTHO05D004941 2.4e-15 87.0 249 33.7
arahy.Tifrunner.gnm1.ann1.A1HLZR Arachis hypogaea HOM05D000112 ORTHO05D004941 4.6e-14 82.8 246 31.3
Lalb_Chr15g0089651 Lupinus albus HOM05D000112 ORTHO05D004941 7.8e-14 82.0 241 32.0
arahy.Tifrunner.gnm1.ann1.56MJ2J Arachis hypogaea HOM05D000112 ORTHO05D004941 1.3e-13 81.3 246 30.9
Glyma.13G234200 Glycine max HOM05D000112 ORTHO05D004941 1.7e-13 80.9 246 32.5
Glyma.13G174000 Glycine max HOM05D000112 ORTHO05D004941 3.9e-13 79.7 249 31.7
Lalb_Chr20g0121491 Lupinus albus HOM05D000112 ORTHO05D004941 5.1e-13 79.3 244 31.1
CARHR128010 Cardamine hirsuta HOM05D000112 ORTHO05D004941 6.6e-13 79.0 245 31.8
Ca_18601_v3 Cicer arietinum L. HOM05D000112 ORTHO05D004941 6.6e-13 79.0 246 32.9
Glyma.07G202200 Glycine max HOM05D000112 ORTHO05D004941 6.6e-13 79.0 245 31.8
Carub.0004s1557 Capsella rubella HOM05D000112 ORTHO05D004941 8.6e-13 78.6 244 31.6
Lj4g0023958 Lotus japonicus HOM05D000112 ORTHO05D004941 1.5e-12 77.8 246 30.5
AT2G33860 Arabidopsis thaliana HOM05D000112 ORTHO05D004941 1.9e-12 77.4 244 31.1
Sp4g16280 Schrenkiella parvula HOM05D000112 ORTHO05D004941 3.3e-12 76.6 245 30.6
Medtr4g088210 Medicago truncatula HOM05D000112 ORTHO05D004941 5.6e-12 75.9 249 31.3
Thhalv10016394m.g Eutrema salsugineum HOM05D000112 ORTHO05D004941 7.3e-12 75.5 246 30.1
Psat7g116760 Pisum sativum HOM05D000112 ORTHO05D004941 7.3e-12 75.5 246 32.1
MD05G1309400 Malus domestica HOM05D000112 ORTHO05D004941 9.5e-12 75.1 245 30.6
BcaB02g10601 Brassica carinata HOM05D000112 ORTHO05D004941 1.2e-11 74.7 251 30.3
A05p11700 Brassica napus HOM05D000112 ORTHO05D004941 1.2e-11 74.7 251 30.3
BolC4t23090H Brassica oleracea HOM05D000112 ORTHO05D004941 1.2e-11 74.7 245 30.6
BraA05t20115Z Brassica rapa HOM05D000112 ORTHO05D004941 1.2e-11 74.7 251 30.3
A04p26090 Brassica napus HOM05D000112 ORTHO05D004941 2.8e-11 73.6 245 31.4
C04p63430 Brassica napus HOM05D000112 ORTHO05D004941 2.8e-11 73.6 245 31.4
BraA04t18111Z Brassica rapa HOM05D000112 ORTHO05D004941 2.8e-11 73.6 245 31.4
BcaC02g11465 Brassica carinata HOM05D000112 ORTHO05D004941 3.6e-11 73.2 245 30.2
C04p15150 Brassica napus HOM05D000112 ORTHO05D004941 6.2e-11 72.4 251 30.7
DCAR_007988 Daucus carota HOM05D000112 ORTHO05D004941 8.1e-11 72.0 205 33.2
GSVIVG01021128001 Vitis vinifera HOM05D000112 ORTHO05D004941 1.1e-10 71.6 245 29.4
BolC4t27818H Brassica oleracea HOM05D000112 ORTHO05D004941 2.4e-10 70.5 248 31.0
Duzib160G0709 Durio zibethinus HOM05D000112 ORTHO05D004941 3.1e-10 70.1 208 31.2
Peaxi162Scf00099g00127 Petunia axillaris HOM05D000112 ORTHO05D004941 4.0e-10 69.7 243 30.9
Phvul.003G290200 Phaseolus vulgaris HOM05D000112 ORTHO05D004941 5.2e-10 69.3 245 30.6
Nitab4.5_0002104g0010 Nicotiana tabacum HOM05D000112 ORTHO05D004941 1.5e-09 67.8 242 29.8
CAN.G79.95 Capsicum annuum HOM05D000112 ORTHO05D004941 2.0e-09 67.4 245 30.2
CsaV3_6G050480 Cucumis sativus L. HOM05D000112 ORTHO05D004941 2.0e-09 67.4 205 31.7
Gohir.D10G029000 Gossypium hirsutum HOM05D000112 ORTHO05D004941 2.6e-09 67.0 216 31.0
Gorai.011G030900 Gossypium raimondii HOM05D000112 ORTHO05D004941 2.6e-09 67.0 216 31.0
Nitab4.5_0006740g0010 Nicotiana tabacum HOM05D000112 ORTHO05D004941 2.6e-09 67.0 242 29.3
CANSAT35G1858 Cannabis sativa HOM05D000112 ORTHO05D004941 3.4e-09 66.6 243 30.0
MSTRG.13209 Avicennia marina HOM05D000112 ORTHO05D004941 4.4e-09 66.2 246 30.1
MSTRG.7367 Avicennia marina HOM05D000112 ORTHO05D004941 5.8e-09 65.9 206 31.1
COL.COLO4_31402 Corchorus olitorius HOM05D000112 ORTHO05D004941 5.8e-09 65.9 208 31.2
AL4G29670 Arabidopsis lyrata HOM05D000112 ORTHO05D004941 7.6e-09 65.5 245 30.2
Dinv17365 Davidia involucrata HOM05D000112 ORTHO05D004941 7.6e-09 65.5 244 29.9
SalBow8G5546 Salvia bowleyana HOM05D000112 ORTHO05D004941 7.6e-09 65.5 242 28.9
Sopen02g022450 Solanum pennellii HOM05D000112 ORTHO05D004941 1.3e-08 64.7 245 29.4
Ciclev10014391m.g Citrus clementina HOM05D000112 ORTHO05D004941 1.7e-08 64.3 245 29.8
Gohir.D06G135400 Gossypium hirsutum HOM05D000112 ORTHO05D004941 1.7e-08 64.3 208 29.8
Gorai.010G157400 Gossypium raimondii HOM05D000112 ORTHO05D004941 1.7e-08 64.3 208 29.8
BcaC02g07778 Brassica carinata HOM05D000112 ORTHO05D004941 2.2e-08 63.9 246 30.5
MELO3C007251.2 Cucumis melo HOM05D000112 ORTHO05D004941 2.2e-08 63.9 205 30.7
Os01g0753500 Oryza sativa ssp. japonica HOM05D000112 ORTHO05D004941 2.2e-08 63.9 211 31.3
THA.LOC104812619 Tarenaya hassleriana HOM05D000112 ORTHO05D004941 2.2e-08 63.9 244 27.5
Thecc.06G179800 Theobroma cacao HOM05D000112 ORTHO05D004941 2.2e-08 63.9 208 30.8
Gohir.A10G028600 Gossypium hirsutum HOM05D000112 ORTHO05D004941 2.9e-08 63.5 208 30.3
Potri.004G050150 Populus trichocarpa HOM05D000112 ORTHO05D004941 2.9e-08 63.5 246 28.0
Prupe.4G053800 Prunus persica HOM05D000112 ORTHO05D004941 2.9e-08 63.5 206 30.1
Zm00001eb152940 Zea mays HOM05D000112 ORTHO05D004941 3.8e-08 63.2 250 28.4
Actinidia07609 Actinidia chinensis HOM05D000112 ORTHO05D004941 4.9e-08 62.8 209 33.0
Migut.M01096 Erythranthe guttata HOM05D000112 ORTHO05D004941 4.9e-08 62.8 206 29.6
Lj1C1200T8 Lonicera japonica HOM05D000112 ORTHO05D004941 4.9e-08 62.8 243 28.4
Manes.17G050300 Manihot esculenta HOM05D000112 ORTHO05D004941 4.9e-08 62.8 208 30.3
Sed0006214 Sechium edule HOM05D000112 ORTHO05D004941 4.9e-08 62.8 205 30.7
Sed0025230 Sechium edule HOM05D000112 ORTHO05D006442 6.4e-08 62.4 204 28.9
Solyc02g077560.3 Solanum lycopersicum HOM05D000112 ORTHO05D004941 6.4e-08 62.4 206 29.6
THA.LOC104814234 Tarenaya hassleriana HOM05D000112 ORTHO05D004941 6.4e-08 62.4 254 28.0
TWI38G0540 Tripterygium wilfordii HOM05D000112 ORTHO05D004941 6.4e-08 62.4 245 27.8
arahy.Tifrunner.gnm1.ann1.024UA3 Arachis hypogaea HOM05D000112 ORTHO05D004941 1.1e-07 61.6 244 28.7
arahy.Tifrunner.gnm1.ann1.L6KZS8 Arachis hypogaea HOM05D000112 ORTHO05D004941 1.1e-07 61.6 244 28.7
Duzib192G0680 Durio zibethinus HOM05D000112 ORTHO05D004941 1.1e-07 61.6 209 30.1
HanXRQChr04g0116851 Helianthus annuus HOM05D000112 ORTHO05D004941 1.4e-07 61.2 208 31.7
Sabra11G0040900 Salix brachista HOM05D000112 ORTHO05D004941 1.4e-07 61.2 209 29.7
PGSC0003DMG400031769 Solanum tuberosum HOM05D000112 ORTHO05D004941 1.4e-07 61.2 245 29.0
DCAR_004039 Daucus carota HOM05D000112 ORTHO05D004941 1.9e-07 60.8 208 30.8
QL05p043168 Quercus lobata HOM05D000112 ORTHO05D004941 1.9e-07 60.8 246 27.2
Zm00001eb370810 Zea mays HOM05D000112 ORTHO05D004941 1.9e-07 60.8 218 29.8
CSS0020071 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D004941 2.4e-07 60.5 208 30.8
Lsat_1_v5_gn_7_22140 Lactuca sativa HOM05D000112 ORTHO05D004941 3.2e-07 60.1 209 31.6
Nn1g04271 Nelumbo nucifera HOM05D000112 ORTHO05D004941 3.2e-07 60.1 207 30.0
Potri.011G059300 Populus trichocarpa HOM05D000112 ORTHO05D004941 3.2e-07 60.1 246 28.5
Sc05g0007430 Simmondsia chinensis HOM05D000112 ORTHO05D004941 3.2e-07 60.1 205 31.2
Nn2g10724 Nelumbo nucifera HOM05D000112 ORTHO05D006442 5.4e-07 59.3 238 26.9
Ciclev10000976m.g Citrus clementina HOM05D000112 ORTHO05D004941 9.2e-07 58.5 207 30.9
HanXRQChr01g0014391 Helianthus annuus HOM05D000112 ORTHO05D004941 1.2e-06 58.2 208 30.3
MELO3C025758.2 Cucumis melo HOM05D000112 ORTHO05D006442 1.6e-06 57.8 204 29.4
ECA234G2926 Erigeron canadensis HOM05D000112 ORTHO05D004941 1.6e-06 57.8 208 27.4
Lsat_1_v5_gn_4_51680 Lactuca sativa HOM05D000112 ORTHO05D004941 2.1e-06 57.4 214 30.8
SGA_v2.0_scaffold309G48165 Striga asiatica HOM05D000112 ORTHO05D004941 2.1e-06 57.4 205 28.8
CDE08G0872 Ceratophyllum demersum HOM05D000112 ORTHO05D004941 2.7e-06 57.0 245 26.9
Aqoxy1G02260 Aquilegia oxysepala HOM05D000112 ORTHO05D004941 3.5e-06 56.6 204 27.9
Duzib248G0898 Durio zibethinus HOM05D000112 ORTHO05D000564 4.6e-06 56.2 206 29.6


User provided reference genes

Program Settings