Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g201280 Pisum sativum HOM05D007416 ORTHO05D009329 4.1e-56 221.1 105 100.0
TPR.G39540 Trifolium pratense HOM05D007416 ORTHO05D009329 1.3e-41 172.9 112 79.5
TPR.G11747 Trifolium pratense HOM05D007416 ORTHO05D009329 4.8e-41 171.0 112 78.6
Ca_00403_v3 Cicer arietinum L. HOM05D007416 ORTHO05D009329 2.9e-38 161.8 118 72.0
Medtr2g014970 Medicago truncatula HOM05D007416 ORTHO05D009329 1.0e-35 153.3 109 71.6
Glyma.13G152576 Glycine max HOM05D007416 ORTHO05D009329 4.8e-33 144.4 96 72.9
Lj6g0009243 Lotus japonicus HOM05D007416 ORTHO05D009329 4.8e-33 144.4 118 65.3
VMungo0540G0454 Vigna mungo HOM05D007416 ORTHO05D009329 1.8e-32 142.5 104 69.2
Phvul.006G180100 Phaseolus vulgaris HOM05D007416 ORTHO05D009329 5.3e-32 141.0 120 63.3
arahy.Tifrunner.gnm1.ann1.96U62E Arachis hypogaea HOM05D007416 ORTHO05D009329 1.5e-26 122.9 103 58.3
Migut.M01088 Erythranthe guttata HOM05D007416 ORTHO05D009329 2.0e-26 122.5 95 62.1
Lalb_Chr20g0121431 Lupinus albus HOM05D007416 ORTHO05D009329 2.0e-26 122.5 103 59.2
arahy.Tifrunner.gnm1.ann1.46W2M6 Arachis hypogaea HOM05D007416 ORTHO05D009329 5.7e-26 120.9 101 58.4
ECA234G4626 Erigeron canadensis HOM05D007416 ORTHO05D009329 5.7e-26 120.9 91 64.8
Hma1.2p1_1465F.1_g285370 Hydrangea macrophylla HOM05D007416 ORTHO05D009329 1.3e-25 119.8 102 59.8
MD10G1286700 Malus domestica HOM05D007416 ORTHO05D009329 3.7e-25 118.2 101 59.4
SGA_v2.0_scaffold309G48156 Striga asiatica HOM05D007416 ORTHO05D009329 1.1e-24 116.7 87 63.2
SGA_v2.0_scaffold16G07657 Striga asiatica HOM05D007416 ORTHO05D009329 2.4e-24 115.5 94 58.5
BcaB03g12097 Brassica carinata HOM05D007416 ORTHO05D009329 3.1e-24 115.2 88 59.1
Gohir.A02G025200 Gossypium hirsutum HOM05D007416 ORTHO05D009329 3.1e-24 115.2 66 74.2
Gohir.D02G032400 Gossypium hirsutum HOM05D007416 ORTHO05D009329 3.1e-24 115.2 67 73.1
Prupe.4G055000 Prunus persica HOM05D007416 ORTHO05D009329 3.1e-24 115.2 118 51.7
Potri.004G051300 Populus trichocarpa HOM05D007416 ORTHO05D009329 4.1e-24 114.8 112 54.5
Ah.09g237760 Amaranthus hybridus HOM05D007416 ORTHO05D009329 7.0e-24 114.0 98 61.2
AUR62014900 Chenopodium quinoa HOM05D007416 ORTHO05D009329 7.0e-24 114.0 66 77.3
Haze_06330 Corylus avellana HOM05D007416 ORTHO05D009329 7.0e-24 114.0 103 58.3
Manes.17G051100 Manihot esculenta HOM05D007416 ORTHO05D009329 7.0e-24 114.0 104 56.7
PSO675G1239 Papaver somniferum HOM05D007416 ORTHO05D009329 7.0e-24 114.0 97 55.7
AT1G28540 Arabidopsis thaliana HOM05D007416 ORTHO05D009329 9.1e-24 113.6 73 69.9
Oeu012170.1 Olea europaea HOM05D007416 ORTHO05D009329 9.1e-24 113.6 96 60.4
AL1G42170 Arabidopsis lyrata HOM05D007416 ORTHO05D009329 1.2e-23 113.2 71 70.4
A08p25450 Brassica napus HOM05D007416 ORTHO05D009329 1.2e-23 113.2 90 60.0
Cfa000548 Carpinus fangiana HOM05D007416 ORTHO05D009329 1.2e-23 113.2 102 56.9
AUR62031108 Chenopodium quinoa HOM05D007416 ORTHO05D009329 1.2e-23 113.2 115 55.7
Thecc.06G178300 Theobroma cacao HOM05D007416 ORTHO05D009329 1.2e-23 113.2 113 54.9
BcaC01g00068 Brassica carinata HOM05D007416 ORTHO05D009329 1.6e-23 112.8 90 60.0
BraA07t28904Z Brassica rapa HOM05D007416 ORTHO05D009329 1.6e-23 112.8 88 59.1
Carub.0001s2700 Capsella rubella HOM05D007416 ORTHO05D009329 1.6e-23 112.8 71 69.0
Ciclev10017211m.g Citrus clementina HOM05D007416 ORTHO05D009329 1.6e-23 112.8 94 56.4
PGR004G2353 Punica granatum HOM05D007416 ORTHO05D009329 1.6e-23 112.8 100 57.0
BraA08t34496Z Brassica rapa HOM05D007416 ORTHO05D009329 2.0e-23 112.5 87 59.8
CANSAT35G0095 Cannabis sativa HOM05D007416 ORTHO05D009329 2.0e-23 112.5 91 60.4
COL.COLO4_31395 Corchorus olitorius HOM05D007416 ORTHO05D009329 2.0e-23 112.5 114 54.4
Gorai.005G035900 Gossypium raimondii HOM05D007416 ORTHO05D009329 2.0e-23 112.5 98 55.1
TWI38G0960 Tripterygium wilfordii HOM05D007416 ORTHO05D009329 2.0e-23 112.5 103 56.3
Sed0002237 Sechium edule HOM05D007416 ORTHO05D009329 2.7e-23 112.1 112 54.5
Nitab4.5_0014582g0020 Nicotiana tabacum HOM05D007416 ORTHO05D009329 3.5e-23 111.7 87 59.8
MELO3C007245.2 Cucumis melo HOM05D007416 ORTHO05D009329 4.5e-23 111.3 67 73.1
Os06g0524500 Oryza sativa ssp. japonica HOM05D007416 ORTHO05D009329 4.5e-23 111.3 57 78.9
Atru.chr10.1755 Acer truncatum HOM05D007416 ORTHO05D009329 5.9e-23 110.9 94 60.6
C03p75360 Brassica napus HOM05D007416 ORTHO05D009329 5.9e-23 110.9 87 58.6
RcHm_v2.0_Chr5g0009671 Rosa chinensis HOM05D007416 ORTHO05D009329 5.9e-23 110.9 91 60.4
QL05p043606 Quercus lobata HOM05D007416 ORTHO05D009329 7.7e-23 110.5 106 54.7
C07p16790 Brassica napus HOM05D007416 ORTHO05D009329 1.0e-22 110.2 101 57.4
ClCG01G023400 Citrullus lanatus HOM05D007416 ORTHO05D009329 1.0e-22 110.2 67 71.6
Nitab4.5_0002114g0110 Nicotiana tabacum HOM05D007416 ORTHO05D009329 1.0e-22 110.2 89 57.3
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.0e-22 110.2 62 75.8
Aqoxy1G02242 Aquilegia oxysepala HOM05D007416 ORTHO05D009329 1.3e-22 109.8 104 52.9
BolC3t19794H Brassica oleracea HOM05D007416 ORTHO05D009329 1.3e-22 109.8 80 62.5
CAN.G361.15 Capsicum annuum HOM05D007416 ORTHO05D009329 1.3e-22 109.8 91 61.5
Os06g0525000 Oryza sativa ssp. japonica HOM05D007416 ORTHO05D009329 1.3e-22 109.8 57 78.9
unitig_8.g4633 Utricularia gibba HOM05D007416 ORTHO05D009329 1.7e-22 109.4 60 78.3
unitig_8.g4637 Utricularia gibba HOM05D007416 ORTHO05D009329 1.7e-22 109.4 60 78.3
Thhalv10009143m.g Eutrema salsugineum HOM05D007416 ORTHO05D009329 2.2e-22 109.0 84 58.3
TWI63G0778 Tripterygium wilfordii HOM05D007416 ORTHO05D009329 2.2e-22 109.0 95 54.7
CSS0002821 Camellia sinensis var. sinensis HOM05D007416 ORTHO05D009329 2.9e-22 108.6 70 68.6
CsaV3_6G050530 Cucumis sativus L. HOM05D007416 ORTHO05D009329 2.9e-22 108.6 105 52.4
Lsat_1_v5_gn_1_119080 Lactuca sativa HOM05D007416 ORTHO05D009329 2.9e-22 108.6 102 55.9
CARHR028020 Cardamine hirsuta HOM05D007416 ORTHO05D009329 3.8e-22 108.2 101 53.5
Peaxi162Scf00248g00011 Petunia axillaris HOM05D007416 ORTHO05D009329 3.8e-22 108.2 88 58.0
Cc02_g14200 Coffea canephora HOM05D007416 ORTHO05D009329 5.0e-22 107.8 104 51.0
FAN16G3750 Fragaria x ananassa HOM05D007416 ORTHO05D009329 5.0e-22 107.8 94 57.4
Solyc10g008850.2 Solanum lycopersicum HOM05D007416 ORTHO05D009329 5.0e-22 107.8 67 68.7
Sopen10g004640 Solanum pennellii HOM05D007416 ORTHO05D009329 5.0e-22 107.8 67 68.7
Sp1g24790 Schrenkiella parvula HOM05D007416 ORTHO05D009329 6.5e-22 107.5 88 58.0
Sc17g0005840 Simmondsia chinensis HOM05D007416 ORTHO05D009329 6.5e-22 107.5 91 53.8
Cpa.g.sc7.10 Carica papaya HOM05D007416 ORTHO05D009329 8.5e-22 107.1 81 61.7
Dinv17369 Davidia involucrata HOM05D007416 ORTHO05D009329 8.5e-22 107.1 90 55.6
Nn1g06362 Nelumbo nucifera HOM05D007416 ORTHO05D009329 8.5e-22 107.1 69 65.2
SalBow8G2036 Salvia bowleyana HOM05D007416 ORTHO05D009329 8.5e-22 107.1 99 54.5
PGSC0003DMG400022819 Solanum tuberosum HOM05D007416 ORTHO05D009329 8.5e-22 107.1 94 53.2
CiPaw.10G054100 Carya illinoinensis HOM05D007416 ORTHO05D009329 1.1e-21 106.7 100 54.0
FAN21G3844 Fragaria x ananassa HOM05D007416 ORTHO05D009329 1.1e-21 106.7 103 54.4
FvH4_3g08330 Fragaria vesca HOM05D007416 ORTHO05D009329 1.5e-21 106.3 103 54.4
HanXRQChr14g0454031 Helianthus annuus HOM05D007416 ORTHO05D009329 1.5e-21 106.3 71 67.6
THA.LOC104812624 Tarenaya hassleriana HOM05D007416 ORTHO05D009329 1.9e-21 105.9 104 51.9
HPP92_005210 Vanilla planifolia HOM05D007416 ORTHO05D009329 1.9e-21 105.9 95 55.8
CDE05G1837 Ceratophyllum demersum HOM05D007416 ORTHO05D009329 2.5e-21 105.5 82 59.8
Eucgr.D00578 Eucalyptus grandis HOM05D007416 ORTHO05D009329 3.2e-21 105.1 65 66.2
Rhsim02G0137800 Rhododendron simsii HOM05D007416 ORTHO05D009329 5.5e-21 104.4 96 52.1
BolC7t42186H Brassica oleracea HOM05D007416 ORTHO05D009329 7.2e-21 104.0 99 55.6
FAN25G0684 Fragaria x ananassa HOM05D007416 ORTHO05D009329 9.4e-21 103.6 63 69.8
TAR627G0809 Trochodendron aralioides HOM05D003433 ORTHO05D003921 9.4e-21 103.6 73 64.4
EL10Ac8g20461 Beta vulgaris HOM05D007416 ORTHO05D009329 3.6e-20 101.7 83 59.0
Actinidia07614 Actinidia chinensis HOM05D007416 ORTHO05D009329 8.0e-20 100.5 99 50.5
Mapoly0016s0097 Marchantia polymorpha HOM05D007416 ORTHO05D009329 1.0e-19 100.1 80 55.0
HPP92_008637 Vanilla planifolia HOM05D007416 ORTHO05D009329 5.2e-19 97.8 66 65.2
Aa31LG6G11050 Aethionema arabicum HOM05D007416 ORTHO05D009329 1.2e-18 96.7 55 70.9
FAN11G0205 Fragaria x ananassa HOM05D007416 ORTHO05D009329 2.7e-15 85.5 71 60.6
Pp3c24_10110 Physcomitrium patens HOM05D007416 ORTHO05D009329 2.7e-15 85.5 60 56.7
AUR62031107 Chenopodium quinoa HOM05D007416 ORTHO05D009329 3.5e-15 85.1 94 48.9
A07p11140 Brassica napus HOM05D007416 ORTHO05D009329 7.7e-15 84.0 64 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2610 Anthoceros agrestis HOM05D007416 ORTHO05D009329 2.3e-11 72.4 57 52.6
Zm00001eb194760 Zea mays HOM05D007416 ORTHO05D009329 1.0e-06 57.0 48 56.2


User provided reference genes

Program Settings