Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 5.9e-71 270.8 138 100.0
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.5e-55 219.5 149 81.2
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 2.0e-55 219.2 147 81.0
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 3.6e-36 155.2 148 63.5
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.3e-35 152.5 145 64.1
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 6.8e-35 151.0 149 61.7
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 1.6e-31 139.8 140 62.1
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 2.3e-30 136.0 148 61.5
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 4.0e-27 125.2 145 55.2
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.6e-23 113.2 141 53.9
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.3e-22 110.2 141 53.9
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 1.7e-22 109.8 140 52.9
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 1.1e-21 107.1 141 51.1
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 1.9e-21 106.3 143 51.0
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 1.0e-19 100.5 156 50.0
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.4e-18 95.5 144 43.8
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 5.8e-18 94.7 145 49.0
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.7e-17 93.2 145 49.0
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 2.2e-17 92.8 147 43.5
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 3.7e-17 92.0 151 48.3
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 4.9e-17 91.7 157 45.9
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 1.1e-16 90.5 146 46.6
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.6e-15 86.7 147 42.2
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.0e-15 86.3 144 45.8
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 2.0e-15 86.3 168 42.9
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.0e-14 82.4 159 42.1
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 3.0e-14 82.4 142 49.3
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.0e-14 81.6 144 44.4
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 5.0e-14 81.6 144 40.3
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 6.6e-14 81.3 147 42.2
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 8.6e-14 80.9 160 42.5
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 1.1e-13 80.5 160 41.9
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.1e-13 80.5 165 38.2
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.9e-13 79.7 143 46.9
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 4.3e-13 78.6 142 41.5
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 9.5e-13 77.4 144 45.1
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.1e-12 76.3 145 42.8
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.8e-12 75.9 141 39.7
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 3.6e-12 75.5 159 42.1
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 8.1e-12 74.3 154 42.2
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.8e-11 73.2 153 37.9
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.8e-11 73.2 141 38.3
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 4.0e-11 72.0 161 37.9
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 6.8e-11 71.2 149 40.9
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 8.9e-11 70.9 143 41.3
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.2e-10 70.5 145 41.4
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.5e-10 70.1 142 40.8
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.5e-10 70.1 148 40.5
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.5e-10 70.1 156 42.3
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-10 70.1 143 38.5
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.5e-10 70.1 138 40.6
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.4e-10 68.9 150 36.7
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 3.4e-10 68.9 140 39.3
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.5e-10 67.8 147 40.8
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.5e-10 67.8 156 41.7
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.3e-09 67.0 140 38.6
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.7e-09 66.6 144 38.2
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.7e-09 66.6 142 40.1
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.2e-09 66.2 142 43.7
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 2.9e-09 65.9 143 39.2
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 2.9e-09 65.9 142 43.0
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 3.7e-09 65.5 144 39.6
arahy.Tifrunner.gnm1.ann1.I085MR Arachis hypogaea HOM05D004793 ORTHO05D038859 6.4e-09 64.7 177 33.9
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.4e-09 64.7 143 39.9
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 6.4e-09 64.7 141 37.6
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 6.4e-09 64.7 143 35.7
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 8.3e-09 64.3 163 34.4
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 8.3e-09 64.3 141 37.6
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.1e-08 63.9 140 35.0
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 1.1e-08 63.9 142 41.5
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.1e-08 63.9 161 37.3
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 1.1e-08 63.9 155 39.4
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.9e-08 63.2 143 35.7
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 2.4e-08 62.8 93 46.2
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.4e-08 62.8 146 39.0
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 2.4e-08 62.8 141 37.6
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.4e-08 62.8 156 40.4
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 3.2e-08 62.4 138 40.6
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.2e-08 62.4 142 38.7
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.2e-08 62.4 142 38.7
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.2e-08 62.4 145 41.4
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 5.4e-08 61.6 141 35.5
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 7.1e-08 61.2 142 40.8
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 7.1e-08 61.2 142 41.5
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.1e-08 61.2 138 36.2
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.1e-08 61.2 138 36.2
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 7.1e-08 61.2 153 35.3
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 7.1e-08 61.2 143 37.1
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 9.2e-08 60.8 138 39.1
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 9.2e-08 60.8 138 39.1
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 9.2e-08 60.8 146 33.6
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.2e-07 60.5 140 40.7
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.2e-07 60.5 146 37.0
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.6e-07 60.1 151 35.1
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.6e-07 60.1 141 39.0
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.6e-07 60.1 141 39.0
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.6e-07 60.1 141 39.0
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.1e-07 59.7 138 37.7
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 2.1e-07 59.7 148 39.2
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 2.1e-07 59.7 145 41.4
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.7e-07 59.3 151 41.1
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 2.7e-07 59.3 84 46.4
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 3.5e-07 58.9 140 40.0
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.6e-07 58.5 146 32.2
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 6.0e-07 58.2 143 40.6
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.0e-07 58.2 142 38.7
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 7.8e-07 57.8 79 49.4
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 1.0e-06 57.4 142 33.1
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.3e-06 57.0 145 37.2
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 1.7e-06 56.6 46 63.0
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 2.3e-06 56.2 151 36.4
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.0e-06 55.8 141 38.3
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.0e-06 55.8 141 38.3
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 3.0e-06 55.8 49 61.2
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.0e-06 55.8 141 37.6
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 3.0e-06 55.8 149 38.3
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 3.9e-06 55.5 138 42.8
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 3.9e-06 55.5 138 42.8
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 3.9e-06 55.5 138 37.7
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 3.9e-06 55.5 138 37.7
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea HOM05D004793 ORTHO05D038859 5.1e-06 55.1 46 65.2
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 5.1e-06 55.1 138 41.3
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 5.1e-06 55.1 143 37.1
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 6.6e-06 54.7 79 45.6
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 6.6e-06 54.7 143 41.3
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 6.6e-06 54.7 143 41.3
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 6.6e-06 54.7 146 38.4
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 8.6e-06 54.3 141 36.2
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 8.6e-06 54.3 143 35.0


User provided reference genes

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