Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g165600 Pisum sativum HOM05D029535 ORTHO05D002509 2.1e-171 605.5 294 100.0
Psat1g165520 Pisum sativum HOM05D029535 ORTHO05D002509 1.0e-120 437.2 216 100.0
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 1.2e-20 104.8 55 96.4
Psat2g084480 Pisum sativum HOM05D029535 ORTHO05D325727 2.9e-19 100.1 44 100.0
TPR.G23391 Trifolium pratense HOM05D002332 ORTHO05D002509 2.5e-18 97.1 55 89.1
Medtr7g016970 Medicago truncatula HOM05D002332 ORTHO05D002509 4.7e-17 92.8 55 87.3
arahy.Tifrunner.gnm1.ann1.IZUT4R Arachis hypogaea HOM05D002332 ORTHO05D002509 1.8e-16 90.9 55 81.8
Psat0ss5705g0160 Pisum sativum HOM05D029535 ORTHO05D329947 1.5e-15 87.8 54 74.1
Glyma.08G252500 Glycine max HOM05D002332 ORTHO05D002509 2.6e-15 87.0 55 83.6
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 3.3e-15 86.7 55 83.6
VMungo1383G1987 Vigna mungo HOM05D002332 ORTHO05D002509 5.7e-15 85.9 55 76.4
Lj5g0014115 Lotus japonicus HOM05D002332 ORTHO05D002509 8.2e-14 82.0 55 74.5
Phvul.005G107100 Phaseolus vulgaris HOM05D002332 ORTHO05D002509 1.8e-13 80.9 55 72.7
Lalb_Chr17g0336781 Lupinus albus HOM05D002332 ORTHO05D002509 5.3e-13 79.3 55 74.5
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 9.1e-13 78.6 55 70.9
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 9.1e-13 78.6 55 70.9
Phvul.005G174300 Phaseolus vulgaris HOM05D002332 ORTHO05D002509 2.0e-12 77.4 55 69.1
GSVIVG01009478001 Vitis vinifera HOM05D002332 ORTHO05D002509 2.6e-12 77.0 54 72.2
Phvul.008G025800 Phaseolus vulgaris HOM05D002332 ORTHO05D002509 3.5e-12 76.6 55 70.9
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 2.2e-11 73.9 61 63.9
Lj1g0004747 Lotus japonicus HOM05D002332 ORTHO05D002509 2.2e-11 73.9 55 72.7
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 2.2e-11 73.9 58 62.1
QL02p004496 Quercus lobata HOM05D002332 ORTHO05D002509 2.2e-11 73.9 54 68.5
QL06p048778 Quercus lobata HOM05D002332 ORTHO05D002509 2.2e-11 73.9 54 68.5
TPR.G40412 Trifolium pratense HOM05D002332 ORTHO05D002509 2.2e-11 73.9 55 65.5
Ciclev10001126m.g Citrus clementina HOM05D002332 ORTHO05D002509 3.8e-11 73.2 66 54.5
Haze_18030 Corylus avellana HOM05D002332 ORTHO05D002509 3.8e-11 73.2 54 64.8
Cfa018082 Carpinus fangiana HOM05D002332 ORTHO05D002509 6.5e-11 72.4 54 66.7
Sabra14G0018600 Salix brachista HOM05D002332 ORTHO05D002509 8.5e-11 72.0 100 44.0
Actinidia23289 Actinidia chinensis HOM05D002332 ORTHO05D002509 1.1e-10 71.6 77 48.1
Prupe.1G433800 Prunus persica HOM05D002332 ORTHO05D002509 1.9e-10 70.9 74 55.4
COL.COLO4_26530 Corchorus olitorius HOM05D002332 ORTHO05D002509 4.2e-10 69.7 73 52.1
AUR62035906 Chenopodium quinoa HOM05D002332 ORTHO05D002509 7.2e-10 68.9 76 46.1
Potri.014G027200 Populus trichocarpa HOM05D002332 ORTHO05D002509 9.4e-10 68.6 67 55.2
Cc10_g04520 Coffea canephora HOM05D002332 ORTHO05D002509 1.2e-09 68.2 45 71.1
HanXRQChr16g0511391 Helianthus annuus HOM05D002332 ORTHO05D002509 1.6e-09 67.8 44 70.5
Rhsim06G0051400 Rhododendron simsii HOM05D002332 ORTHO05D002509 2.1e-09 67.4 77 42.9
vmacro21505 Vaccinium macrocarpon HOM05D002332 ORTHO05D002509 2.7e-09 67.0 77 42.9
Peaxi162Scf00458g00325 Petunia axillaris HOM05D002332 ORTHO05D002509 3.6e-09 66.6 43 69.8
TAR625G1294 Trochodendron aralioides HOM05D002332 ORTHO05D002509 3.6e-09 66.6 54 63.0
AUR62035333 Chenopodium quinoa HOM05D002332 ORTHO05D002509 4.7e-09 66.2 76 44.7
MSTRG.25068 Avicennia marina HOM05D002332 ORTHO05D002509 6.1e-09 65.9 45 64.4
EL10Ac3g06747 Beta vulgaris HOM05D002332 ORTHO05D002509 6.1e-09 65.9 90 42.2
Cpa.g.sc65.26 Carica papaya HOM05D002332 ORTHO05D002509 6.1e-09 65.9 67 52.2
ClCG05G019990 Citrullus lanatus HOM05D002332 ORTHO05D002509 6.1e-09 65.9 57 61.4
MELO3C016764.2 Cucumis melo HOM05D002332 ORTHO05D002509 6.1e-09 65.9 54 63.0
CANSAT64G1916 Cannabis sativa HOM05D002332 ORTHO05D002509 8.0e-09 65.5 54 64.8
Ah.13g075040 Amaranthus hybridus HOM05D002332 ORTHO05D002509 1.0e-08 65.1 65 50.8
SGA_v2.0_scaffold62G21510 Striga asiatica HOM05D002332 ORTHO05D002509 1.0e-08 65.1 45 64.4
Hma1.2p1_0360F.1_g135610 Hydrangea macrophylla HOM05D002332 ORTHO05D002509 1.4e-08 64.7 45 66.7
Oeu012425.1 Olea europaea HOM05D002332 ORTHO05D002509 1.8e-08 64.3 45 64.4
DCAR_011828 Daucus carota HOM05D002332 ORTHO05D002509 3.0e-08 63.5 67 49.3
Nitab4.5_0000287g0170 Nicotiana tabacum HOM05D002332 ORTHO05D002509 4.0e-08 63.2 44 65.9
CsaV3_4G034460 Cucumis sativus L. HOM05D002332 ORTHO05D002509 5.2e-08 62.8 67 55.2
Dinv39304 Davidia involucrata HOM05D002332 ORTHO05D002509 5.2e-08 62.8 78 44.9
Nitab4.5_0003677g0020 Nicotiana tabacum HOM05D002332 ORTHO05D002509 5.2e-08 62.8 44 63.6
RcHm_v2.0_Chr6g0308111 Rosa chinensis HOM05D002332 ORTHO05D002509 5.2e-08 62.8 54 61.1
Sed0026906 Sechium edule HOM05D002332 ORTHO05D002509 5.2e-08 62.8 57 59.6
Eucgr.F02332 Eucalyptus grandis HOM05D002332 ORTHO05D002509 6.7e-08 62.4 54 55.6
FAN20G1644 Fragaria x ananassa HOM05D002332 ORTHO05D002509 8.8e-08 62.0 54 59.3
FAN24G2812 Fragaria x ananassa HOM05D002332 ORTHO05D002509 8.8e-08 62.0 54 59.3
FAN27G1527 Fragaria x ananassa HOM05D002332 ORTHO05D002509 8.8e-08 62.0 54 59.3
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 8.8e-08 62.0 44 65.9
Ah.13g075150 Amaranthus hybridus HOM05D002332 ORTHO05D002509 1.2e-07 61.6 71 45.1
Manes.18G038500 Manihot esculenta HOM05D002332 ORTHO05D002509 1.2e-07 61.6 62 51.6
Atru.chr13.711 Acer truncatum HOM05D002332 ORTHO05D002509 1.5e-07 61.2 43 62.8
Thecc.08G005100 Theobroma cacao HOM05D002332 ORTHO05D002509 1.5e-07 61.2 66 51.5
FAN15G0333 Fragaria x ananassa HOM05D002332 ORTHO05D002509 2.6e-07 60.5 54 57.4
Solyc04g078780.3 Solanum lycopersicum HOM05D002332 ORTHO05D002509 2.6e-07 60.5 44 63.6
Sopen04g032380 Solanum pennellii HOM05D002332 ORTHO05D002509 2.6e-07 60.5 44 63.6
ECA246G3545 Erigeron canadensis HOM05D002332 ORTHO05D002509 4.4e-07 59.7 52 55.8
FvH4_2g34270 Fragaria vesca HOM05D002332 ORTHO05D002509 4.4e-07 59.7 54 57.4
MD15G1081000 Malus domestica HOM05D002332 ORTHO05D002509 4.4e-07 59.7 54 55.6
PSO675G4923 Papaver somniferum HOM05D002332 ORTHO05D002509 4.4e-07 59.7 53 54.7
SalBow7G2328 Salvia bowleyana HOM05D002332 ORTHO05D002509 4.4e-07 59.7 71 42.3
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 7.5e-07 58.9 54 53.7
Gohir.A06G019300 Gossypium hirsutum HOM05D002332 ORTHO05D002509 9.7e-07 58.5 71 46.5
TWI36G1206 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 9.7e-07 58.5 54 55.6
PSO541G3218 Papaver somniferum HOM05D002332 ORTHO05D002509 1.3e-06 58.2 53 52.8
MBI08_g39927_MAGBIO Magnolia biondii HOM05D002332 ORTHO05D002509 2.8e-06 57.0 49 55.1
Duzib093G1319 Durio zibethinus HOM05D002332 ORTHO05D002509 3.7e-06 56.6 71 45.1
Lj4A60G15 Lonicera japonica HOM05D002332 ORTHO05D002509 4.8e-06 56.2 44 52.3
Migut.C00568 Erythranthe guttata HOM05D002332 ORTHO05D002509 6.3e-06 55.8 56 50.0
PGR031G1323 Punica granatum HOM05D002332 ORTHO05D002509 6.3e-06 55.8 54 51.9
PGSC0003DMG400007963 Solanum tuberosum HOM05D002332 ORTHO05D002509 8.2e-06 55.5 42 59.5


User provided reference genes

Program Settings