Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 4.1e-81 304.7 155 100.0
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 4.4e-67 258.1 156 84.6
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.5e-51 206.5 125 83.2
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 5.6e-46 188.0 154 64.9
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.3e-45 186.8 155 63.9
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 3.8e-42 175.3 153 58.2
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 7.3e-38 161.0 142 57.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.3e-37 160.2 156 55.1
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.3e-34 150.2 148 54.1
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.8e-34 148.7 140 53.6
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 7.1e-33 144.4 155 51.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.3e-31 140.2 150 53.3
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.3e-31 140.2 156 50.0
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.0e-31 139.0 152 50.7
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 3.3e-30 135.6 145 52.4
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 9.6e-30 134.0 148 50.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-29 132.5 145 51.7
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.7e-29 132.1 144 48.6
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 4.8e-29 131.7 152 46.1
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.2e-29 131.3 144 50.7
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.2e-29 131.3 145 51.0
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.4e-28 129.4 151 45.7
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.1e-28 129.0 155 49.7
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 5.3e-28 128.3 149 49.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.9e-28 127.9 152 51.3
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 9.0e-28 127.5 158 45.6
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.6e-27 125.9 154 46.8
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.5e-27 125.2 153 46.4
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 4.5e-27 125.2 153 49.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.7e-26 123.2 155 47.1
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.2e-26 122.9 156 48.1
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 8.4e-26 120.9 153 46.4
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 8.4e-26 120.9 142 50.7
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.2e-25 119.0 157 45.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 5.5e-25 118.2 153 46.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.2e-24 117.1 148 47.3
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.7e-24 115.9 148 46.6
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.7e-24 115.9 146 45.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.5e-24 115.5 147 44.9
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.5e-24 115.5 157 47.8
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 3.5e-24 115.5 158 43.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 3.5e-24 115.5 143 44.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 7.9e-24 114.4 95 60.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.0e-23 114.0 155 42.6
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.0e-23 114.0 144 50.0
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.0e-23 114.0 145 42.8
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.8e-23 113.2 153 45.1
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.8e-23 113.2 152 44.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.8e-23 113.2 144 49.3
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 3.9e-23 112.1 129 55.0
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 3.9e-23 112.1 161 43.5
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 3.9e-23 112.1 161 43.5
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 5.1e-23 111.7 151 43.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 6.7e-23 111.3 153 45.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 4.3e-22 108.6 149 47.0
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 5.7e-22 108.2 155 42.6
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 9.6e-22 107.5 153 45.1
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.3e-21 107.1 151 44.4
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.1e-21 106.3 148 42.6
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.7e-21 105.5 150 41.3
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-21 105.1 143 44.8
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-21 105.1 143 44.8
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.8e-21 105.1 153 43.1
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 4.8e-21 105.1 150 41.3
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.1e-20 104.0 145 42.8
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.8e-20 103.2 150 40.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.8e-20 103.2 149 39.6
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 4.0e-20 102.1 148 43.2
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 5.3e-20 101.7 148 41.2
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 5.3e-20 101.7 129 44.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.2e-19 100.5 136 46.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.5e-19 100.1 153 41.8
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 3.4e-19 99.0 128 46.1
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 5.8e-19 98.2 160 45.6
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.7e-18 96.7 146 41.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.2e-18 96.3 153 38.6
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 3.8e-18 95.5 143 37.1
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.8e-18 95.5 154 39.6
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 3.8e-18 95.5 153 38.6
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.0e-18 95.1 153 37.3
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 8.4e-18 94.4 152 40.8
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-17 93.6 144 41.0
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-17 93.2 142 43.7
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.2e-17 92.4 146 40.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 7.1e-17 91.3 119 42.0
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 9.3e-17 90.9 149 39.6
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 2.7e-16 89.4 154 34.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.6e-16 88.6 109 44.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 6.1e-16 88.2 121 43.0
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-15 87.4 150 38.7
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-15 87.0 160 39.4
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.8e-15 86.7 146 40.4
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 110 43.6
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.0e-15 85.9 152 39.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.0e-15 85.9 130 40.0
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 3.9e-15 85.5 125 43.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-15 85.5 106 43.4
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 6.7e-15 84.7 120 42.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 6.7e-15 84.7 141 39.7
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-14 83.6 106 42.5
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 4.3e-14 82.0 125 38.4
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.3e-14 82.0 122 42.6
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 4.3e-14 82.0 133 37.6
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 4.3e-14 82.0 149 37.6
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-14 82.0 106 41.5
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-14 82.0 106 41.5
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-14 82.0 153 37.3
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 4.3e-14 82.0 160 35.0
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 5.7e-14 81.6 144 38.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 106 41.5
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-14 81.6 106 41.5
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 7.4e-14 81.3 162 35.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.4e-14 81.3 116 43.1
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 7.4e-14 81.3 126 39.7
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-14 81.3 106 42.5
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-14 81.3 106 42.5
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.7e-14 80.9 158 37.3
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-13 80.5 140 38.6
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 2.2e-13 79.7 125 40.0
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-13 79.7 106 42.5
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.8e-13 79.3 113 46.9
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-13 79.3 118 34.7
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 3.7e-13 79.0 139 38.8
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 4.8e-13 78.6 106 39.6
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 6.3e-13 78.2 145 37.2
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 6.3e-13 78.2 106 41.5
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-12 77.4 142 38.7
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-12 77.0 149 37.6
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-12 77.0 148 39.2
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-12 76.3 110 45.5
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 3.1e-12 75.9 126 38.1
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.1e-12 75.5 146 37.7
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 4.1e-12 75.5 154 37.0
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.3e-12 75.1 154 34.4
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.3e-12 75.1 148 38.5
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 6.9e-12 74.7 158 36.1
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 6.9e-12 74.7 117 37.6
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 9.0e-12 74.3 122 41.0
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.0e-11 73.2 151 35.8
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 3.4e-11 72.4 155 34.2
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 3.4e-11 72.4 147 38.1
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.4e-11 72.4 139 33.8
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.9e-11 71.6 146 38.4
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 5.9e-11 71.6 146 35.6
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 7.7e-11 71.2 132 37.1
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 7.7e-11 71.2 132 37.1
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.3e-10 70.5 155 33.5
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.7e-10 70.1 147 36.1
QL06p009891 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-10 69.3 118 33.9
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.0e-10 68.6 83 47.0
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.5e-10 68.2 148 35.1
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-09 66.6 150 31.3
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-09 66.6 116 31.9
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.9e-09 66.6 99 42.4
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 3.2e-09 65.9 120 35.0
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 5.5e-09 65.1 140 30.7
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 9.4e-09 64.3 121 38.0
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-08 63.5 139 36.7
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.6e-08 63.5 110 38.2
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-08 63.5 143 36.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.1e-08 63.2 139 36.7
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 6.1e-08 61.6 133 32.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.0e-07 60.8 124 35.5
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-07 60.8 92 39.1
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 1.4e-07 60.5 121 37.2
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 1.4e-07 60.5 121 37.2
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 1.4e-07 60.5 121 37.2
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-07 59.7 139 34.5
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.3e-07 59.7 116 38.8
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 3.0e-07 59.3 148 35.8
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 3.9e-07 58.9 174 34.5
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.1e-06 57.4 96 41.7
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.1e-06 57.4 98 36.7
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.5e-06 57.0 128 32.0
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 4.3e-06 55.5 137 35.0
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 9.7e-06 54.3 162 31.5
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 9.7e-06 54.3 162 31.5
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.7e-06 54.3 142 36.6


User provided reference genes

Program Settings