Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 7.7e-277 957.2 782 100.0
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.2e-221 773.9 809 81.8
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 1.3e-210 737.3 685 84.4
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 1.3e-204 717.2 686 82.8
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.7e-175 620.5 684 76.5
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 2.2e-175 620.2 684 77.5
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.8e-172 610.5 687 76.0
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.5e-168 597.4 684 73.8
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 1.7e-167 594.0 803 75.0
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 5.0e-167 592.4 803 74.8
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 8.3e-154 548.5 684 73.0
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 5.4e-129 466.1 805 68.1
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 8.3e-122 442.2 682 63.5
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 2.4e-121 440.7 682 63.5
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 4.4e-115 419.9 685 62.5
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 7.6e-115 419.1 680 60.9
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.4e-113 414.8 682 59.1
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 2.1e-112 411.0 678 63.4
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.3e-111 407.5 674 61.6
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.0e-111 407.1 674 61.6
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 8.6e-111 405.6 682 58.8
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.1e-108 398.7 672 60.7
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 1.1e-108 398.7 673 60.8
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.1e-108 398.7 678 62.5
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 3.1e-108 397.1 678 60.0
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 6.8e-108 396.0 673 60.2
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 7.1e-105 386.0 684 60.4
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 2.1e-104 384.4 672 59.5
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 6.0e-104 382.9 683 59.0
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 1.1e-102 378.6 678 56.3
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 2.5e-102 377.5 778 64.5
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 8.1e-101 372.5 680 58.7
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 3.1e-100 370.5 677 60.1
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 1.2e-99 368.6 590 66.1
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.6e-99 367.5 363 54.3
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.2e-96 358.6 600 61.0
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.2e-96 358.6 657 51.3
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 1.3e-95 355.1 667 42.0
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 3.4e-91 340.5 682 57.8
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 1.6e-88 331.6 664 55.7
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 1.3e-87 328.6 673 52.3
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 3.0e-87 327.4 654 43.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 6.7e-87 326.2 651 58.2
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 3.3e-86 323.9 336 49.1
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 1.3e-85 322.0 669 57.0
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 3.1e-84 317.4 671 55.3
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 3.8e-82 310.5 588 52.4
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 5.5e-81 306.6 678 54.1
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 8.7e-79 299.3 656 55.9
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 8.7e-79 299.3 677 54.1
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 1.9e-78 298.1 669 54.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 4.8e-77 293.5 609 58.5
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.2e-75 288.9 674 52.7
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 4.5e-75 287.0 670 54.8
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 6.5e-74 283.1 678 53.5
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.2e-72 278.9 673 54.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 7.9e-72 276.2 672 51.6
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 2.3e-71 274.6 361 42.1
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 3.0e-71 274.2 655 53.0
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 5.7e-70 270.0 655 53.0
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.6e-69 268.5 358 44.4
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.7e-66 258.5 654 51.4
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 1.9e-65 255.0 653 53.0
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 5.5e-65 253.4 656 53.8
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 3.6e-64 250.8 678 51.6
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 2.3e-63 248.1 653 51.5
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 9.1e-60 236.1 648 52.2
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 1.3e-58 232.3 657 53.0
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.7e-58 231.9 344 37.2
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 2.9e-58 231.1 646 52.0
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.9e-57 228.4 342 37.1
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 7.2e-57 226.5 657 51.8
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 8.8e-55 219.5 652 53.1
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 1.5e-54 218.8 655 52.2
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 2.0e-54 218.4 655 52.1
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 2.6e-54 218.0 655 52.4
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 1.1e-52 212.6 263 47.5
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.1e-52 212.6 360 39.2
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 3.1e-52 211.1 653 49.5
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 3.1e-52 211.1 708 49.3
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 1.2e-51 209.1 350 35.1
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 1.2e-51 209.1 350 35.1
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 2.4e-44 184.9 525 50.5
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 4.5e-43 180.6 654 50.6
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 2.9e-42 177.9 654 51.1
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 3.2e-41 174.5 654 50.5
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.0e-38 165.2 165 60.0
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.2e-35 156.0 778 54.6
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 5.0e-34 150.6 177 44.1
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 1.1e-33 149.4 362 51.7
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 1.1e-33 149.4 347 35.4
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 5.5e-33 147.1 480 59.4
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 6.8e-31 140.2 429 61.3
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 1.7e-29 135.6 447 60.2
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 2.0e-27 128.6 425 61.4
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 1.0e-26 126.3 176 79.5
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 3.6e-24 117.9 386 64.5
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 3.6e-24 117.9 207 34.3
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.6e-22 111.7 323 24.8
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.5e-22 110.2 384 65.1
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 5.4e-20 104.0 540 50.7
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 1.2e-19 102.8 323 30.3
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.7e-13 82.4 103 39.8
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 2.2e-13 82.0 146 37.7
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 3.0e-10 71.6 129 41.1
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.0e-10 71.6 184 25.0
Nitab4.5_0002941g0070 Nicotiana tabacum HOM05D008483 ORTHO05D010726 5.6e-09 67.4 97 34.0
Migut.N01822 Erythranthe guttata HOM05D005973 ORTHO05D007285 7.3e-09 67.0 176 25.0
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.6e-08 65.9 106 31.1
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 3.6e-08 64.7 103 29.1
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 3.6e-08 64.7 103 29.1
SGA_v2.0_scaffold354G49737 Striga asiatica HOM05D005973 ORTHO05D007285 8.1e-08 63.5 213 26.8
AagrBONN_evm.TU.Sc2ySwM_228.3505 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-07 63.2 250 22.8
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 1.1e-07 63.2 107 35.5
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 1.4e-07 62.8 351 20.5
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 1.8e-07 62.4 237 22.4
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 1.8e-07 62.4 103 35.0
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 3.1e-07 61.6 301 22.3
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 3.1e-07 61.6 107 28.0
BolC8t51204H Brassica oleracea HOM05D003039 ORTHO05D008410 5.2e-07 60.8 301 22.3
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 5.2e-07 60.8 186 23.7
Nitab4.5_0000030g0110 Nicotiana tabacum HOM05D008483 ORTHO05D010726 5.2e-07 60.8 96 31.2
AagrBONN_evm.TU.Sc2ySwM_362.652 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-07 60.5 250 27.6
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 8.9e-07 60.1 48 54.2
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 1.2e-06 59.7 281 23.8
AagrBONN_evm.TU.Sc2ySwM_344.3486 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-06 59.3 234 23.5
AagrBONN_evm.TU.Sc2ySwM_344.5452 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-06 58.5 273 23.4
CARHR012020 Cardamine hirsuta HOM05D002890 ORTHO05D009847 2.6e-06 58.5 100 36.0
AagrBONN_evm.TU.Sc2ySwM_228.635 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-06 58.2 250 23.2
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 3.4e-06 58.2 79 36.7
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 3.4e-06 58.2 102 32.4
AagrBONN_evm.TU.Sc2ySwM_368.1672 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-06 57.8 232 25.9
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 4.4e-06 57.8 96 36.5
AagrBONN_evm.TU.Sc2ySwM_228.172 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-06 57.4 245 21.6
AagrBONN_evm.TU.Sc2ySwM_368.2388 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-06 57.4 244 22.5
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 5.8e-06 57.4 173 23.7
EL10Ac8g20438 Beta vulgaris HOM05D002986 ORTHO05D007611 5.8e-06 57.4 89 34.8
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 5.8e-06 57.4 105 30.5
Sc13g0007300 Simmondsia chinensis HOM05D006842 ORTHO05D008908 5.8e-06 57.4 91 33.0
Eucgr.E03336 Eucalyptus grandis HOM05D002986 ORTHO05D007611 7.5e-06 57.0 89 36.0
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 7.5e-06 57.0 92 37.0
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 7.5e-06 57.0 99 31.3
AagrBONN_evm.TU.Sc2ySwM_228.174 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.8e-06 56.6 213 23.0
AagrBONN_evm.TU.Sc2ySwM_228.4820 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.8e-06 56.6 263 22.4
AagrBONN_evm.TU.Sc2ySwM_228.5845 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.8e-06 56.6 245 21.6
AagrBONN_evm.TU.Sc2ySwM_362.65 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.8e-06 56.6 245 21.6
Oeu027349.1 Olea europaea HOM05D005973 ORTHO05D007285 9.8e-06 56.6 178 26.4


User provided reference genes

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