Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 9.2e-148 526.9 280 100.0
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 1.9e-116 422.9 250 91.2
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 9.6e-113 410.6 248 89.1
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 1.5e-97 360.1 250 75.2
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 3.3e-97 359.0 249 75.9
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 1.8e-95 353.2 254 71.7
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 2.2e-93 346.3 250 73.6
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 1.8e-90 336.7 249 71.9
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 1.4e-84 317.0 249 66.3
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 3.2e-84 315.8 249 66.3
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 1.1e-71 274.2 249 59.8
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 1.1e-71 274.2 249 59.8
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 1.6e-70 270.4 250 57.6
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 3.5e-70 269.2 242 58.3
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 7.7e-70 268.1 250 56.4
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 6.5e-69 265.0 250 56.4
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 6.5e-69 265.0 250 56.4
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 3.2e-68 262.7 242 59.5
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 5.5e-68 261.9 250 55.2
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 1.2e-67 260.8 250 56.8
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 2.1e-67 260.0 249 57.8
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 4.7e-67 258.8 251 57.8
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 6.1e-67 258.5 249 56.6
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 1.5e-65 253.8 250 55.2
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 3.4e-65 252.7 252 55.2
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 3.4e-65 252.7 250 55.6
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 4.8e-64 248.8 250 53.6
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 7.0e-63 245.0 252 53.6
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 9.1e-63 244.6 257 53.3
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 9.1e-63 244.6 250 54.0
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 4.5e-62 242.3 250 52.4
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 4.5e-62 242.3 252 52.8
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 2.2e-61 240.0 247 54.3
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 3.8e-61 239.2 249 55.0
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 1.5e-60 237.3 255 52.2
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 3.2e-60 236.1 255 52.5
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 4.7e-59 232.3 253 54.2
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 4.7e-59 232.3 233 52.4
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 8.0e-59 231.5 245 53.1
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 4.0e-58 229.2 250 51.6
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 6.8e-58 228.4 245 51.8
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 1.5e-57 227.3 276 47.5
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 3.4e-57 226.1 243 49.8
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 4.4e-57 225.7 245 52.2
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 9.8e-57 224.6 245 51.4
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 2.2e-56 223.4 245 51.0
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 3.7e-56 222.6 245 50.6
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 4.9e-56 222.2 243 51.4
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 8.3e-56 221.5 245 52.2
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 1.4e-55 220.7 245 51.0
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 4.1e-55 219.2 248 48.0
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 1.6e-54 217.2 214 54.2
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 2.0e-54 216.9 242 47.5
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 3.5e-54 216.1 293 44.4
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 3.5e-54 216.1 194 58.2
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 6.6e-53 211.8 248 50.4
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 8.6e-53 211.5 263 47.1
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 8.6e-53 211.5 248 51.2
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 1.1e-52 211.1 249 48.2
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 3.3e-52 209.5 240 47.9
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 5.5e-52 208.8 251 50.2
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 7.2e-52 208.4 249 45.4
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 1.0e-50 204.5 253 49.8
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 6.8e-50 201.8 238 45.0
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 8.9e-50 201.4 126 84.9
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 2.4e-47 193.4 252 44.8
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 1.2e-46 191.0 245 46.1
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 7.8e-46 188.3 257 43.6
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 4.3e-44 182.6 246 40.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 5.6e-44 182.2 228 46.1
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 4.7e-43 179.1 200 50.0
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 1.4e-42 177.6 242 44.6
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 8.9e-42 174.9 246 41.5
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 2.0e-41 173.7 202 47.5
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 2.0e-41 173.7 263 42.2
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.2e-40 170.2 242 42.6
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 8.3e-40 168.3 293 38.9
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 5.4e-39 165.6 242 42.1
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 9.2e-39 164.9 276 38.0
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 9.2e-39 164.9 200 46.5
Potri.018G141166 Populus trichocarpa HOM05D007474 ORTHO05D009367 1.9e-36 157.1 144 59.7
CSS0031812 Camellia sinensis var. sinensis HOM05D007474 ORTHO05D009367 9.5e-36 154.8 164 51.8
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.4e-34 151.0 249 38.2
Eucgr.C00103 Eucalyptus grandis HOM05D007474 ORTHO05D009367 1.8e-34 150.6 145 53.1
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 4.0e-34 149.4 242 40.1
vmacro20808 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 2.9e-32 143.3 146 53.4
Hma1.2p1_0140F.1_g063730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 3.3e-28 129.8 114 58.8
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 5.2e-26 122.5 126 50.8
PGR142G3816 Punica granatum HOM05D007474 ORTHO05D009367 2.6e-25 120.2 120 52.5
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 3.6e-19 99.8 242 29.3
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 1.8e-18 97.4 126 44.4
AUR62004543 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.6e-17 93.6 167 37.1
Actinidia07550 Actinidia chinensis HOM05D007474 ORTHO05D009367 4.4e-17 92.8 78 57.7
Lj4A313T24 Lonicera japonica HOM05D007474 ORTHO05D009367 1.7e-16 90.9 84 58.3
arahy.Tifrunner.gnm1.ann1.245C1J Arachis hypogaea HOM05D007474 ORTHO05D009367 2.9e-16 90.1 65 67.7
arahy.Tifrunner.gnm1.ann1.TVY351 Arachis hypogaea HOM05D007474 ORTHO05D009367 4.6e-14 82.8 61 65.6
Lju170C0T1 Lonicera japonica HOM05D007424 ORTHO05D009367 3.6e-11 73.2 82 50.0
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 1.4e-10 71.2 97 44.3
Mapoly0011s0196 Marchantia polymorpha HOM05D007474 ORTHO05D009367 5.8e-09 65.9 257 23.0
arahy.Tifrunner.gnm1.ann1.J5XFRX Arachis hypogaea HOM05D011742 ORTHO05D014450 2.2e-08 63.9 55 58.2
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 3.8e-08 63.2 55 61.8
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 6.4e-08 62.4 100 39.0
Actinidia07549 Actinidia chinensis HOM05D007474 ORTHO05D009367 6.0e-06 55.8 47 63.8


User provided reference genes

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