Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 4.3e-118 428.7 355 100.0
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 9.4e-81 304.7 359 83.8
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 4.1e-76 289.3 350 81.4
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 1.9e-65 253.8 350 77.7
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 4.7e-64 249.2 356 71.1
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 3.7e-61 239.6 361 73.1
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.1e-60 238.0 332 79.2
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 1.2e-59 234.6 357 72.3
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 1.5e-57 227.6 353 72.8
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 3.3e-57 226.5 330 73.9
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 2.1e-56 223.8 355 69.3
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 2.6e-54 216.9 328 70.7
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 7.5e-54 215.3 353 72.5
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.2e-53 213.8 317 70.3
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.9e-53 213.4 353 68.6
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.1e-52 211.5 352 58.2
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 3.2e-52 209.9 352 67.6
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 5.4e-52 209.1 344 68.6
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 9.2e-52 208.4 356 67.1
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 2.3e-50 203.8 322 75.5
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.9e-50 203.0 331 59.2
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 6.6e-50 202.2 354 65.5
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 8.6e-50 201.8 337 66.8
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 3.3e-49 199.9 329 66.6
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 9.5e-49 198.4 317 73.2
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.6e-48 197.6 338 66.9
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 4.7e-48 196.1 351 65.0
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 4.7e-48 196.1 324 65.1
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 6.2e-48 195.7 317 73.2
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 8.1e-48 195.3 290 74.5
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 8.1e-48 195.3 290 74.8
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.8e-47 194.1 350 68.3
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 2.3e-47 193.7 318 68.9
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 3.1e-47 193.4 352 58.8
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 1.2e-46 191.4 352 67.0
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 2.6e-46 190.3 331 71.0
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.4e-46 189.9 353 58.9
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 3.4e-46 189.9 352 58.2
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 7.5e-46 188.7 344 61.0
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.3e-45 188.0 331 59.8
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.7e-45 187.6 356 62.1
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.2e-45 187.2 320 68.8
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 2.2e-45 187.2 356 69.1
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.9e-45 186.8 362 66.6
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 4.9e-45 186.0 364 62.6
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 4.9e-45 186.0 342 69.9
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 6.4e-45 185.7 342 57.0
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.9e-44 184.1 321 67.6
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.4e-44 183.7 360 62.5
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 5.4e-44 182.6 319 52.7
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 5.4e-44 182.6 328 69.8
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 7.1e-44 182.2 320 72.2
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.2e-43 181.4 342 60.2
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 2.7e-43 180.3 353 60.6
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 3.5e-43 179.9 316 68.7
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 6.0e-43 179.1 353 66.9
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 7.8e-43 178.7 370 66.5
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 1.7e-42 177.6 318 67.6
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 3.0e-42 176.8 364 61.3
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 3.0e-42 176.8 364 61.3
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 3.0e-42 176.8 364 61.3
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 3.0e-42 176.8 364 61.3
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.9e-42 176.4 338 60.7
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 5.1e-42 176.0 351 65.5
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 6.6e-42 175.6 318 67.9
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-41 174.9 325 62.5
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.5e-41 174.5 327 69.7
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 1.9e-41 174.1 309 72.5
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.5e-41 173.7 308 66.9
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 4.3e-41 172.9 324 61.1
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 4.3e-41 172.9 338 61.2
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 5.6e-41 172.6 309 73.1
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 7.3e-41 172.2 331 59.8
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 9.5e-41 171.8 342 56.4
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.2e-40 171.4 297 69.7
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.2e-40 171.4 331 58.6
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 1.6e-40 171.0 324 67.3
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 1.6e-40 171.0 304 73.7
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.1e-40 170.6 328 65.9
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.6e-40 169.9 346 61.3
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.6e-40 169.9 309 71.2
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 4.7e-40 169.5 337 63.5
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 4.7e-40 169.5 349 46.7
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 1.4e-39 167.9 327 55.7
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.8e-39 167.5 354 64.7
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.1e-39 166.8 328 63.1
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.1e-39 166.8 337 54.6
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.7e-37 159.8 262 83.2
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.9e-36 157.5 305 67.5
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.4e-36 157.1 319 60.8
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.4e-36 157.1 319 60.8
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 7.1e-36 155.6 358 58.7
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 7.1e-36 155.6 335 67.8
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 9.2e-36 155.2 358 58.7
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 9.2e-36 155.2 319 68.3
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 1.6e-35 154.5 377 57.8
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 1.6e-35 154.5 349 55.3
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 1.6e-35 154.5 335 67.8
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.3e-34 150.6 350 60.3
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 3.0e-34 150.2 311 68.5
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 3.0e-34 150.2 304 59.5
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 3.0e-34 150.2 349 64.8
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 1.1e-33 148.3 343 45.2
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.5e-33 147.9 281 67.6
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 2.5e-33 147.1 347 62.0
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.3e-33 146.7 321 67.9
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 4.3e-33 146.4 327 57.5
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.6e-32 144.4 326 66.9
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.8e-32 143.7 343 57.7
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 4.7e-32 142.9 327 60.9
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.8e-31 141.0 325 66.2
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 3.1e-31 140.2 325 54.5
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 3.1e-31 140.2 325 54.5
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 3.1e-31 140.2 349 63.3
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.2e-30 138.3 361 57.1
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.5e-30 137.9 366 53.6
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 2.0e-30 137.5 339 64.6
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 2.0e-30 137.5 339 64.6
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 2.6e-30 137.1 325 62.8
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 2.6e-30 137.1 358 53.4
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 4.4e-30 136.3 321 63.2
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 5.8e-30 136.0 339 64.9
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 5.8e-30 136.0 357 59.4
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 7.6e-30 135.6 362 60.5
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 9.9e-30 135.2 324 59.3
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 9.9e-30 135.2 299 69.9
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 9.9e-30 135.2 364 55.5
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.9e-29 133.7 342 53.5
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.4e-29 132.5 357 56.6
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.4e-29 132.5 314 65.9
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 1.4e-28 131.3 329 50.2
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.4e-28 130.6 331 58.6
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 3.2e-28 130.2 296 65.5
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 4.6e-27 126.3 340 55.0
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 4.6e-27 126.3 334 55.7
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.3e-26 124.8 279 62.4
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 6.6e-26 122.5 338 64.8
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 4.3e-25 119.8 331 49.8
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 7.3e-25 119.0 332 59.0
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 9.6e-25 118.6 314 56.7
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 9.6e-25 118.6 382 39.8
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.6e-24 117.9 327 57.8
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 6.2e-24 115.9 342 62.9
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.4e-23 114.8 310 64.5
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 2.4e-23 114.0 311 57.6
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 2.0e-22 110.9 312 59.9
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 3.4e-22 110.2 312 59.6
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 5.8e-22 109.4 318 54.1
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 9.9e-22 108.6 312 64.1
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 4.9e-21 106.3 340 60.0
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 6.4e-21 105.9 347 58.2
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-20 105.1 156 50.6
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.9e-20 104.4 159 57.9
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 2.4e-20 104.0 326 59.2
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 3.2e-20 103.6 343 52.8
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 2.7e-19 100.5 355 49.9
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.0e-18 98.6 358 52.0
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 2.3e-18 97.4 358 51.7
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 2.3e-18 97.4 268 49.6
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 3.0e-18 97.1 318 56.6
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 5.1e-18 96.3 305 35.7
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 6.6e-18 95.9 317 39.7
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.1e-17 95.1 158 51.9
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 3.3e-17 93.6 338 53.3
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 4.3e-17 93.2 359 52.6
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 5.6e-17 92.8 96 59.4
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.3e-16 91.7 331 45.0
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 8.1e-16 89.0 95 52.6
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 8.1e-16 89.0 95 52.6
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 4.0e-15 86.7 96 50.0
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 9.0e-15 85.5 95 51.6
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.0e-14 84.3 157 60.5
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 4.5e-14 83.2 155 54.2
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.1e-12 78.6 239 66.5
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 1.4e-12 78.2 152 63.8
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 2.4e-12 77.4 349 49.6
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 2.4e-12 77.4 349 49.6
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 2.4e-12 77.4 349 49.6
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.2e-11 75.1 242 61.6
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.6e-11 74.7 163 53.4
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 3.5e-11 73.6 358 37.2
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 3.3e-09 67.0 100 42.0
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.6e-06 57.4 116 51.7


User provided reference genes

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