Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 8.6e-111 404.4 351 100.0
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 5.7e-78 295.4 352 82.4
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 9.0e-68 261.5 357 77.6
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 1.1e-65 254.6 350 77.7
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 3.3e-62 243.0 351 72.1
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.3e-61 241.1 332 78.6
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 1.7e-61 240.7 351 71.5
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.3e-58 231.1 355 67.6
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.9e-57 227.3 329 72.9
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 5.9e-51 205.7 354 71.2
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.7e-50 204.1 344 68.9
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 5.0e-50 202.6 353 55.8
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 8.5e-50 201.8 322 68.3
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.5e-49 200.3 352 66.8
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 3.2e-49 199.9 336 66.7
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 4.2e-49 199.5 356 64.9
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 9.4e-49 198.4 329 62.6
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.7e-48 196.1 353 55.8
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 4.7e-48 196.1 320 65.9
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 1.0e-47 194.9 331 65.9
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.4e-47 194.5 353 64.3
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.8e-47 194.1 357 64.1
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 5.2e-47 192.6 351 69.5
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 8.8e-47 191.8 321 67.3
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.3e-46 189.9 353 57.5
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 7.4e-46 188.7 354 63.8
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 7.4e-46 188.7 353 63.7
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.3e-45 188.0 352 63.1
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 1.7e-45 187.6 296 72.3
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 1.7e-45 187.6 296 72.6
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.7e-45 187.6 332 66.6
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 3.7e-45 186.4 344 66.3
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 4.8e-45 186.0 360 67.5
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 1.1e-44 184.9 336 63.4
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 3.1e-44 183.3 353 56.4
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 5.3e-44 182.6 322 66.1
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 5.3e-44 182.6 353 56.4
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 9.1e-44 181.8 336 67.9
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 9.1e-44 181.8 321 69.2
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.2e-43 181.4 335 61.2
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 1.2e-43 181.4 353 61.2
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.2e-43 181.4 344 68.6
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.6e-43 181.0 358 62.0
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 2.0e-43 180.6 337 67.1
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 2.6e-43 180.3 325 71.7
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 3.5e-43 179.9 320 61.6
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 4.5e-43 179.5 320 62.2
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 4.5e-43 179.5 353 55.5
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 5.9e-43 179.1 322 66.5
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 5.9e-43 179.1 361 65.7
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 7.7e-43 178.7 358 63.1
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 7.7e-43 178.7 319 69.6
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.0e-42 178.3 329 57.4
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.3e-42 177.9 364 58.0
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-42 177.9 329 61.4
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.7e-42 177.6 321 66.7
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 2.2e-42 177.2 320 64.1
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.8e-42 176.4 378 59.5
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 3.8e-42 176.4 353 56.4
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 8.5e-42 175.3 372 59.7
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 8.5e-42 175.3 328 64.0
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 2.5e-41 173.7 354 66.7
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 2.5e-41 173.7 355 67.3
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 3.2e-41 173.3 308 72.1
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.5e-41 172.6 322 65.2
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 9.4e-41 171.8 322 65.2
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 9.4e-41 171.8 322 65.2
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 9.4e-41 171.8 322 65.2
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 9.4e-41 171.8 322 65.2
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.2e-40 171.4 323 65.3
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 1.6e-40 171.0 327 59.6
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 2.1e-40 170.6 323 65.0
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.7e-40 169.5 325 60.9
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.0e-39 168.3 343 62.7
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 1.0e-39 168.3 313 70.3
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.4e-39 167.9 320 70.0
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.0e-39 166.8 322 66.5
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 3.0e-39 166.8 355 63.9
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 8.8e-39 165.2 322 63.0
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 2.0e-38 164.1 294 69.0
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 5.7e-38 162.5 325 49.8
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 7.5e-38 162.2 330 67.9
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 7.5e-38 162.2 360 63.3
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 9.8e-38 161.8 331 61.6
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-37 161.4 359 58.8
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 1.3e-37 161.4 359 58.8
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.3e-37 161.4 335 54.6
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.2e-37 160.6 322 65.8
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.2e-37 160.6 356 59.3
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 2.2e-37 160.6 348 44.8
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.2e-37 160.6 304 64.5
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.7e-37 159.8 322 68.3
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 4.8e-37 159.5 322 66.1
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 6.3e-37 159.1 369 63.4
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 1.8e-36 157.5 325 60.9
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.1e-36 156.4 305 68.5
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 7.0e-36 155.6 341 61.0
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 7.0e-36 155.6 364 62.1
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.2e-35 154.8 323 64.7
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 2.0e-35 154.1 321 64.8
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 4.5e-35 152.9 335 63.3
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.3e-34 151.4 346 60.4
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 2.9e-34 150.2 322 68.0
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 3.8e-34 149.8 341 54.3
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 8.5e-34 148.7 325 66.2
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 8.5e-34 148.7 310 65.2
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 1.1e-33 148.3 322 68.0
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 2.5e-33 147.1 309 67.0
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 3.2e-33 146.7 308 56.5
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 9.4e-33 145.2 324 65.4
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 2.1e-32 144.1 326 64.1
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 3.6e-32 143.3 285 65.6
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 1.0e-31 141.7 324 67.0
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.4e-31 141.4 320 71.6
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 3.4e-30 136.7 326 54.6
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 3.4e-30 136.7 326 54.6
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.4e-30 136.7 321 59.2
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.4e-30 136.3 322 65.2
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 4.4e-30 136.3 359 60.2
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 5.7e-30 136.0 328 45.7
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 7.5e-30 135.6 365 52.9
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.7e-29 134.4 251 80.9
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 2.2e-29 134.0 326 62.3
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 1.1e-28 131.7 319 61.1
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.4e-28 131.3 327 63.6
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.4e-28 131.3 360 56.1
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 3.1e-28 130.2 334 62.6
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.1e-28 130.2 320 64.7
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 4.1e-28 129.8 330 50.0
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 4.1e-28 129.8 323 62.8
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 1.2e-27 128.3 332 63.0
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 1.2e-27 128.3 332 63.0
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.2e-27 128.3 331 62.5
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 2.7e-27 127.1 333 56.5
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 4.5e-27 126.3 332 63.3
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 5.9e-27 125.9 347 56.5
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.3e-26 124.8 310 69.4
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.7e-26 124.4 324 62.3
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.7e-26 124.4 318 59.7
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 2.9e-26 123.6 321 62.0
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 2.9e-26 123.6 316 68.4
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 3.8e-26 123.2 341 56.6
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 3.8e-26 123.2 359 51.3
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 5.0e-26 122.9 159 52.8
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 8.6e-26 122.1 332 61.7
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 8.6e-26 122.1 364 40.4
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 1.5e-25 121.3 317 66.2
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 5.6e-25 119.4 324 48.1
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 7.2e-25 119.0 316 63.6
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 7.2e-25 119.0 316 63.6
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.2e-24 118.2 252 70.2
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 2.1e-24 117.5 359 55.4
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 4.7e-24 116.3 359 55.2
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 6.1e-24 115.9 360 56.1
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 8.0e-24 115.5 334 62.9
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 1.0e-23 115.2 315 57.1
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.0e-23 115.2 336 62.5
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.8e-23 114.4 282 59.9
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 3.0e-23 113.6 321 63.2
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 4.0e-23 113.2 317 64.0
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 4.0e-23 113.2 316 61.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.4e-22 110.2 161 52.8
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 7.5e-22 109.0 320 40.3
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 8.3e-21 105.5 330 46.1
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.2e-19 101.7 309 35.0
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 2.3e-18 97.4 151 62.3
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 5.0e-18 96.3 212 53.8
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 8.6e-18 95.5 343 55.4
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 8.6e-18 95.5 343 55.4
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 8.6e-18 95.5 343 55.4
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.9e-17 94.4 98 53.1
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.9e-17 94.4 98 53.1
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 2.1e-16 90.9 98 52.0
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 4.7e-16 89.7 156 59.6
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 6.2e-16 89.4 322 44.4
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.4e-15 88.2 229 73.8
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 2.0e-14 84.3 256 63.7
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 2.6e-14 84.0 157 54.1
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 4.4e-14 83.2 195 55.9
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.2e-12 77.0 85 52.9
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 9.2e-12 75.5 268 46.6
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 5.6e-09 66.2 78 46.2
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.3e-07 60.8 116 53.4
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 2.3e-07 60.8 101 34.7
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 5.2e-07 59.7 100 39.0


User provided reference genes

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