Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.7e-104 380.9 194 100.0
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.1e-96 356.7 194 95.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.6e-93 345.5 194 91.2
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 5.9e-93 344.4 194 89.2
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.7e-90 335.5 194 89.7
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 7.9e-90 334.0 194 85.1
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 3.9e-89 331.6 194 85.6
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 6.7e-89 330.9 194 84.0
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.4e-88 327.4 194 84.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 7.4e-88 327.4 194 85.6
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 9.7e-88 327.0 194 85.1
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.8e-87 325.5 194 86.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 3.7e-87 325.1 194 86.1
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 4.8e-87 324.7 198 86.4
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 86.1
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 84.5
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 6.3e-87 324.3 198 82.8
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 8.2e-87 323.9 194 84.5
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-86 323.6 194 85.6
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.4e-86 323.2 194 85.1
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.4e-86 323.2 194 85.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.3e-86 321.2 194 85.1
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.9e-86 320.9 197 82.7
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 84.5
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.4e-85 318.5 197 82.2
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 7.7e-85 317.4 193 82.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.0e-84 317.0 194 83.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 82.5
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.3e-84 316.6 196 82.7
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.2e-84 315.8 194 82.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 2.2e-84 315.8 194 83.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.0e-84 314.7 195 82.6
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 6.5e-84 314.3 194 82.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 8.5e-84 313.9 194 80.4
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 8.5e-84 313.9 194 83.5
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 80.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 83.5
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.9e-83 312.8 199 80.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.9e-83 312.8 199 80.4
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.9e-83 312.8 197 79.7
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.5e-83 312.4 194 81.4
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.5e-83 312.4 195 82.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.5e-83 312.4 194 82.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 3.2e-83 312.0 199 79.4
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.2e-83 312.0 201 78.1
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 3.2e-83 312.0 199 78.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.2e-83 312.0 201 77.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.2e-83 311.6 201 79.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.2e-83 311.6 201 79.1
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 4.2e-83 311.6 194 81.4
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 7.2e-83 310.8 199 79.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 7.2e-83 310.8 199 79.4
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 7.2e-83 310.8 199 79.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 7.2e-83 310.8 198 79.8
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.4e-83 310.5 194 80.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.4e-83 310.5 194 80.9
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 79.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.6e-82 309.7 199 77.9
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.1e-82 309.3 199 78.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.1e-82 309.3 194 80.4
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.6e-82 308.5 199 79.4
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.6e-82 308.5 199 79.4
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 6.1e-82 307.8 201 77.1
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.0e-81 307.0 194 80.4
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.0e-81 307.0 196 80.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-81 306.6 197 79.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.4e-81 306.6 197 79.2
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.4e-81 306.6 197 80.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.4e-81 306.6 199 77.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.4e-81 306.6 194 79.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.4e-81 306.6 194 79.9
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.8e-81 306.2 200 77.0
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.8e-81 306.2 194 79.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.8e-81 306.2 204 76.0
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.3e-81 305.8 194 78.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.3e-81 305.8 203 74.4
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.0e-81 305.4 198 76.3
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.0e-81 305.4 196 79.1
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 3.9e-81 305.1 196 79.1
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.9e-81 305.1 194 78.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 5.1e-81 304.7 195 77.9
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 6.7e-81 304.3 199 77.9
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 6.7e-81 304.3 194 76.8
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 77.8
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 202 77.7
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 77.8
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.0e-80 302.8 194 77.8
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.0e-80 302.8 196 76.5
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 198 78.8
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.6e-80 302.4 201 74.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 3.3e-80 302.0 194 78.4
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.4e-80 301.6 206 76.2
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 7.4e-80 300.8 203 74.9
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.3e-79 300.1 198 78.3
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.2e-79 299.3 193 78.8
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.2e-79 299.3 194 78.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.8e-79 298.9 194 79.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 3.7e-79 298.5 196 75.0
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 8.2e-79 297.4 192 76.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.8e-78 296.2 200 74.5
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.4e-78 295.8 198 77.8
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.4e-78 295.8 233 70.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.4e-78 295.8 210 72.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.2e-77 293.5 194 76.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.6e-77 293.1 201 73.1
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 5.9e-77 291.2 202 73.8
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 7.7e-77 290.8 198 75.8
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 7.7e-77 290.8 194 77.3
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.0e-76 290.4 176 84.7
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.0e-76 290.4 194 74.7
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.8e-76 288.5 186 79.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 5.0e-76 288.1 200 73.5
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 6.5e-76 287.7 199 74.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 6.5e-76 287.7 200 73.5
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.1e-75 287.0 217 69.6
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.5e-75 285.8 244 64.3
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.2e-75 285.0 194 77.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.6e-74 283.1 180 80.6
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.6e-74 283.1 175 82.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.6e-74 283.1 199 72.9
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.6e-74 283.1 211 71.1
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 8.0e-74 280.8 189 75.7
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 8.0e-74 280.8 223 66.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.0e-73 278.5 183 77.6
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.5e-72 276.6 192 70.3
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.6e-72 275.8 175 80.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.3e-71 271.2 180 77.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.4e-70 269.2 193 68.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.2e-69 266.9 194 72.2
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.7e-69 265.8 201 70.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 3.5e-69 265.4 215 67.9
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 4.2e-67 258.5 192 65.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.1e-66 256.1 213 64.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.8e-65 253.1 204 67.2
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.2e-64 250.4 194 69.1
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.6e-64 249.2 182 69.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 7.5e-64 247.7 185 67.0
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.8e-64 247.3 187 66.8
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.3e-63 246.9 198 63.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.4e-62 243.4 194 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.0e-60 237.3 180 66.1
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.0e-60 237.3 177 70.6
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 4.4e-56 221.9 201 61.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 7.7e-53 211.1 153 70.6
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.3e-49 199.5 122 85.2
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 6.4e-47 191.4 116 81.9
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.7e-44 183.3 177 57.6
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.8e-41 173.3 99 89.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.8e-41 173.3 99 89.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 4.4e-40 168.7 94 91.5
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.9e-39 166.0 188 56.9
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 9.5e-35 151.0 97 72.2
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.9e-30 136.7 97 76.3
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 2.1e-29 133.3 197 47.7
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 7.8e-29 131.3 70 92.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.0e-28 131.0 98 71.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.3e-28 129.8 79 77.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.6e-24 116.3 78 65.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 8.4e-23 111.3 194 39.7
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.2e-22 109.4 110 53.6
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-21 107.5 100 64.0
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 8.6e-20 101.3 73 65.8
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.5e-19 100.5 194 41.2
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-19 100.5 72 69.4
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.1e-17 94.4 194 40.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.2e-14 82.8 60 63.3
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 4.2e-14 82.4 64 62.5
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.4e-14 82.0 51 80.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 7.1e-14 81.6 167 35.3
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.3e-14 81.3 53 77.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 5.6e-11 72.0 59 59.3
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 9.6e-11 71.2 72 56.9


User provided reference genes

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