Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 2286.5 1165 100.0
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 2040.8 1168 88.1
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1970.3 1168 85.6
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1961.0 1170 86.2
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1762.7 1175 77.8
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1760.7 1173 78.0
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1713.0 1159 75.3
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1683.7 1166 75.6
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1672.5 1164 75.3
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1636.3 1215 71.9
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1572.4 1195 71.1
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1433.7 1164 65.6
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1399.8 1164 64.5
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1395.9 1156 63.6
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1381.3 1169 64.0
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1380.9 1180 62.0
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1377.8 1161 63.0
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1377.8 1151 63.7
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1377.5 1166 63.1
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1374.8 1161 63.0
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1371.3 1162 63.3
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1363.6 1160 62.7
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1354.0 1145 64.0
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1350.5 1154 62.0
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1333.5 1172 60.5
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1328.5 1143 63.1
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1327.0 1171 59.7
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1324.3 1140 61.4
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1320.8 1147 61.2
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1313.1 1178 59.3
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1312.7 1036 64.3
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1311.2 1170 60.2
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1311.2 1128 61.3
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1307.0 1147 60.8
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1303.9 837 81.5
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1302.7 1172 60.5
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1302.3 1208 58.2
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1292.7 1161 59.9
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1290.4 1160 59.8
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1290.0 1153 60.9
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1282.3 1037 63.2
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1281.5 1157 60.4
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1276.2 1170 58.5
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1273.1 1160 59.0
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1253.8 1174 58.9
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1249.2 1334 55.2
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1246.9 1174 59.0
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1238.4 1125 58.3
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1224.5 1151 57.9
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1219.9 1178 57.6
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1215.3 1173 55.8
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1210.3 1647 46.0
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1208.0 1127 58.0
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1206.0 1233 54.0
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1199.5 1162 57.7
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1199.5 1134 56.2
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1187.2 1154 55.3
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1181.0 1167 55.4
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1176.4 1082 60.3
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1174.8 1176 54.6
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1169.1 1168 55.4
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1168.7 1158 56.9
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1163.7 1166 54.2
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1158.7 1175 55.1
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1156.7 1147 55.5
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1156.7 1147 55.5
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1154.4 1178 54.5
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1154.0 1169 54.3
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1150.2 1137 56.3
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1147.1 1156 55.3
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1147.1 1143 54.9
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1143.6 1156 56.7
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1141.7 950 61.9
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1130.5 1198 52.3
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1119.0 1175 52.9
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1118.2 1000 58.4
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1114.8 1136 54.6
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1103.6 1143 52.8
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1102.0 1100 54.0
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1099.3 1144 53.8
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1098.2 660 83.2
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1097.8 652 83.7
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 0.0e+00 1083.9 1149 52.1
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 2.3e-309 1065.8 1035 53.2
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 4.5e-305 1051.6 1072 54.9
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 2.3e-293 1012.7 1230 48.5
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 3.3e-292 1008.8 1184 47.4
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 8.2e-291 1004.2 633 78.2
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.9e-279 966.5 1146 48.3
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 3.8e-264 915.6 968 52.0
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 6.1e-262 908.3 1132 46.0
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 5.2e-245 852.0 736 59.8
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 9.8e-244 847.8 1180 43.8
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 5.4e-234 815.5 717 56.1
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 9.5e-223 778.1 1045 44.3
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.4e-194 683.7 1180 38.8
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 2.8e-190 670.2 968 39.4
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.7e-187 661.0 800 48.9
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 2.5e-186 657.1 1031 37.5
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 5.1e-184 649.4 670 53.3
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.6e-174 617.8 1215 36.1
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 5.5e-170 602.8 490 63.3
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.8e-168 597.8 1200 35.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 4.2e-138 496.9 1220 30.2
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 4.4e-111 407.1 431 53.4
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.1e-100 371.7 408 51.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 7.7e-63 246.9 275 45.5
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 3.3e-58 231.5 178 61.8
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 6.1e-36 157.5 116 65.5
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 5.9e-31 141.0 293 34.1
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 3.0e-27 128.6 107 59.8
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.4e-24 119.8 271 30.3
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 4.5e-23 114.8 81 69.1
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 7.0e-16 90.9 81 59.3
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 2.7e-15 89.0 61 73.8
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.0e-11 77.0 85 49.4
Medtr6g074160 Medicago truncatula HOM05D006302 ORTHO05D007960 1.5e-10 73.2 41 80.5
Medtr6g074780 Medicago truncatula HOM05D000005 ORTHO05D000012 4.4e-10 71.6 37 86.5
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 7.5e-10 70.9 43 72.1
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 4.1e-08 65.1 39 74.4
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 1.6e-07 63.2 174 42.0
Medtr6g478020 Medicago truncatula HOM05D000005 ORTHO05D000012 1.6e-07 63.2 42 69.0
Medtr6g074790 Medicago truncatula HOM05D006302 ORTHO05D007960 2.0e-07 62.8 46 71.7
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 6.0e-07 61.2 36 75.0
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.3e-06 60.1 71 46.5
Medtr6g472240 Medicago truncatula HOM05D006302 ORTHO05D261209 1.7e-06 59.7 69 49.3
Lsat_1_v5_gn_0_32400 Lactuca sativa HOM05D002303 ORTHO05D004329 3.9e-06 58.5 100 40.0


User provided reference genes

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