Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 3.4e-43 178.3 118 100.0
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 5.6e-30 134.4 118 82.2
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 8.1e-29 130.6 118 79.7
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 1.5e-27 126.3 118 75.4
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 5.6e-22 107.8 118 73.7
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 4.8e-21 104.8 65 83.1
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 1.4e-20 103.2 118 68.6
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 5.3e-20 101.3 118 71.2
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 5.3e-20 101.3 119 66.4
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 7.6e-19 97.4 118 65.3
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 1.3e-18 96.7 118 63.6
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 3.8e-18 95.1 117 57.3
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 6.4e-18 94.4 119 62.2
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 1.4e-17 93.2 118 66.9
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 4.2e-17 91.7 118 63.6
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 5.4e-17 91.3 119 65.5
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 5.4e-17 91.3 118 59.3
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 9.3e-17 90.5 119 64.7
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 9.3e-17 90.5 118 58.5
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 1.2e-16 90.1 117 63.2
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 3.5e-16 88.6 117 56.4
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 1.0e-15 87.0 118 63.6
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 2.3e-15 85.9 118 57.6
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 2.3e-15 85.9 118 65.3
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 2.3e-15 85.9 118 63.6
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 2.3e-15 85.9 118 63.6
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 3.9e-15 85.1 118 61.9
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 3.9e-15 85.1 117 66.7
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 5.1e-15 84.7 127 53.5
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 6.7e-15 84.3 120 55.8
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 6.7e-15 84.3 117 51.3
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 8.7e-15 84.0 116 54.3
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 1.1e-14 83.6 118 61.9
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 1.1e-14 83.6 118 61.9
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.1e-14 83.6 116 54.3
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 1.5e-14 83.2 118 61.0
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 4.3e-14 81.6 124 56.5
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 4.3e-14 81.6 124 56.5
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 5.6e-14 81.3 118 60.2
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 5.6e-14 81.3 118 59.3
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 5.6e-14 81.3 118 62.7
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 5.6e-14 81.3 117 53.8
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 9.6e-14 80.5 118 56.8
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 2.8e-13 79.0 118 61.9
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 2.8e-13 79.0 118 61.9
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 4.8e-13 78.2 118 62.7
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 4.8e-13 78.2 65 60.0
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 4.8e-13 78.2 118 55.9
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 6.2e-13 77.8 92 62.0
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 8.1e-13 77.4 117 53.8
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 1.8e-12 76.3 118 55.1
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 3.1e-12 75.5 117 53.0
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 4.0e-12 75.1 118 61.9
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 5.3e-12 74.7 117 55.6
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 5.3e-12 74.7 118 58.5
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 2.6e-11 72.4 118 50.0
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 7.6e-11 70.9 64 56.2
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 9.9e-11 70.5 117 55.6
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 1.3e-10 70.1 117 56.4
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 1.3e-10 70.1 118 54.2
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 1.7e-10 69.7 117 50.4
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 3.8e-10 68.6 65 52.3
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 4.9e-10 68.2 64 53.1
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 8.4e-10 67.4 117 52.1
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 8.4e-10 67.4 115 54.8
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 8.4e-10 67.4 117 49.6
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 8.4e-10 67.4 117 58.1
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 1.9e-09 66.2 117 50.4
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 1.9e-09 66.2 116 56.9
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 2.4e-09 65.9 63 49.2
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 4.2e-09 65.1 117 54.7
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 7.1e-09 64.3 118 55.1
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 7.1e-09 64.3 124 54.8
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 2.1e-08 62.8 118 54.2
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 3.5e-08 62.0 117 53.0
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 3.5e-08 62.0 117 53.0
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 3.5e-08 62.0 117 53.0
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 3.5e-08 62.0 117 53.0
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 3.5e-08 62.0 118 55.9
MD05G1000400 Malus domestica HOM05D007581 ORTHO05D009250 7.9e-08 60.8 72 73.6
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 1.0e-07 60.5 117 55.6
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 1.3e-07 60.1 79 73.4
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 1.3e-07 60.1 59 50.8
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 6.7e-07 57.8 89 41.6
VMungo0464G1076 Vigna mungo HOM05D007581 ORTHO05D009250 1.1e-06 57.0 61 72.1
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 1.5e-06 56.6 115 51.3
Cfa008025 Carpinus fangiana HOM05D007581 ORTHO05D009250 1.5e-06 56.6 33 78.8
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 3.3e-06 55.5 63 44.4
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 7.4e-06 54.3 76 72.4


User provided reference genes

Program Settings